BioC experimental data: CHECK report for bsseqData on petty

Package: bsseqData

Version: 0.6.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings bsseqData_0.6.0.tar.gz

StartedAt: 2015-10-07 09:02:46 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 09:05:24 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 158.6 seconds

RetCode: 0

Status:  OK

CheckDir: bsseqData.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings bsseqData_0.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/bsseqData.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bsseqData/DESCRIPTION’ ... OK
* this is package ‘bsseqData’ version ‘0.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bsseqData’ can be installed ... [58s/69s] OK
* checking installed package size ... NOTE
  installed size is 200.9Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [11s/11s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/bsseqData.Rcheck/00check.log’
for details.

* installing *source* package ‘bsseqData’ ...
** data
*** moving datasets to lazyload DB
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (bsseqData)

name	user	system	elapsed
BS.cancer.ex	1.923	0.235	2.161
BS.cancer.ex.fit	2.395	0.507	2.903
BS.cancer.ex.tstat	0.313	0.087	0.400
keepLoci.ex	0.005	0.001	0.005