BioC experimental data: CHECK report for seq2pathway.data on petty

Package: seq2pathway.data

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings seq2pathway.data_1.0.0.tar.gz

StartedAt: 2015-10-07 09:50:07 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 09:50:54 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 47.2 seconds

RetCode: 0

Status:  OK

CheckDir: seq2pathway.data.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings seq2pathway.data_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/seq2pathway.data.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seq2pathway.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seq2pathway.data’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seq2pathway.data’ can be installed ... [2s/7s] OK
* checking installed package size ... NOTE
  installed size is 225.9Mb
  sub-directories of 1Mb or more:
    data       4.1Mb
    extdata  221.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/seq2pathway.data.Rcheck/00check.log’
for details.

* installing *source* package ‘seq2pathway.data’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seq2pathway.data)

name	user	system	elapsed
Des_BP_list	0.084	0.017	0.106
Des_CC_list	0.035	0.003	0.040
Des_MF_list	0.072	0.004	0.077
GO_BP_list	0.168	0.012	0.184
GO_CC_list	0.116	0.002	0.120
GO_GENCODE_df_hg_v19	0.029	0.011	0.041
GO_GENCODE_df_hg_v20	0.033	0.011	0.045
GO_GENCODE_df_mm_vM1	0.032	0.010	0.044
GO_GENCODE_df_mm_vM3	0.022	0.009	0.032
GO_MF_list	0.055	0.010	0.065
Msig_GENCODE_df_hg_v19	0.033	0.010	0.044
Msig_GENCODE_df_hg_v20	0.039	0.010	0.051
Msig_GENCODE_df_mm_vM1	0.025	0.010	0.037
Msig_GENCODE_df_mm_vM3	0.036	0.011	0.047
gencode_coding	0.825	0.016	0.842