BioC experimental data: CHECK report for waveTilingData on petty

Package: waveTilingData

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings waveTilingData_1.4.0.tar.gz

StartedAt: 2015-10-07 10:01:33 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 10:04:50 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 196.9 seconds

RetCode: 0

Status:  OK

CheckDir: waveTilingData.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings waveTilingData_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/waveTilingData.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘waveTilingData/DESCRIPTION’ ... OK
* this is package ‘waveTilingData’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘waveTilingData’ can be installed ... [2s/8s] OK
* checking installed package size ... NOTE
  installed size is 240.8Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [75s/75s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
leafdev                  35.146  1.349  36.520
leafdevBQ                23.825  1.127  24.953
leafdevMapAndFilterTAIR9 10.540  0.165  10.771
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/waveTilingData.Rcheck/00check.log’
for details.

* installing *source* package ‘waveTilingData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (waveTilingData)

name	user	system	elapsed
leafdev	35.146	1.349	36.520
leafdevBQ	23.825	1.127	24.953
leafdevFit	1.014	0.075	1.090
leafdevInfCompare	0.959	0.084	1.043
leafdevMapAndFilterTAIR9	10.540	0.165	10.771