BioC experimental data: CHECK report for Fletcher2013a on zin2
This page was generated on 2015-10-07 16:20:59 -0700 (Wed, 07 Oct 2015).
Fletcher2013a 1.4.0 Mauro Castro
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/Fletcher2013a | Last Changed Rev: 3279 / Revision: 3442 | Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
Summary
Package: Fletcher2013a |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings Fletcher2013a_1.4.0.tar.gz |
StartedAt: 2015-10-07 09:43:26 -0700 (Wed, 07 Oct 2015) |
EndedAt: 2015-10-07 09:44:49 -0700 (Wed, 07 Oct 2015) |
EllapsedTime: 82.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Fletcher2013a.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings Fletcher2013a_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/Fletcher2013a.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Fletcher2013a/DESCRIPTION’ ... OK
* this is package ‘Fletcher2013a’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Fletcher2013a’ can be installed ... [2s/5s] OK
* checking installed package size ... NOTE
installed size is 65.3Mb
sub-directories of 1Mb or more:
data 64.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.1-data-experiment/meat/Fletcher2013a.Rcheck/00check.log’
for details.
Fletcher2013a.Rcheck/00install.out:
* installing *source* package ‘Fletcher2013a’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Fletcher2013a)
Fletcher2013a.Rcheck/Fletcher2013a-Ex.timings:
name | user | system | elapsed
|
Exp1 | 0.621 | 0.000 | 1.507 |
|
Exp2 | 0.717 | 0.016 | 1.197 |
|
Exp3 | 1.116 | 0.011 | 2.065 |
|
Fletcher2013a.pipelines | 0.001 | 0.000 | 0.001 |
|
siESR1 | 0.222 | 0.004 | 0.337 |
|
siOTHERS | 0.552 | 0.004 | 0.886 |
|