BioC experimental data: CHECK report for RRBSdata on zin2

Package: RRBSdata

Version: 0.102.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings RRBSdata_0.102.0.tar.gz

StartedAt: 2015-10-07 10:41:07 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 10:46:00 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 292.4 seconds

RetCode: 0

Status:  OK

CheckDir: RRBSdata.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings RRBSdata_0.102.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/RRBSdata.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RRBSdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RRBSdata’ version ‘0.102.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RRBSdata’ can be installed ... [7s/14s] OK
* checking installed package size ... NOTE
  installed size is 74.0Mb
  sub-directories of 1Mb or more:
    data  73.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [57s/92s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
rrbs 47.267  1.534   79.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/RRBSdata.Rcheck/00check.log’
for details.

* installing *source* package ‘RRBSdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (RRBSdata)

name	user	system	elapsed
diffMethCpGs	0.730	0.004	1.292
islands	0.119	0.004	0.256
rrbs	47.267	1.534	79.230