BioC experimental data: CHECK report for seq2pathway.data on petty
This page was generated on 2015-10-07 16:21:56 -0700 (Wed, 07 Oct 2015).
seq2pathway.data 1.0.0 Bin Wang
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/seq2pathway.data | Last Changed Rev: 3279 / Revision: 3442 | Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: seq2pathway.data |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings seq2pathway.data_1.0.0.tar.gz |
StartedAt: 2015-10-07 09:50:07 -0700 (Wed, 07 Oct 2015) |
EndedAt: 2015-10-07 09:50:54 -0700 (Wed, 07 Oct 2015) |
EllapsedTime: 47.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: seq2pathway.data.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings seq2pathway.data_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/seq2pathway.data.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seq2pathway.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seq2pathway.data’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seq2pathway.data’ can be installed ... [2s/7s] OK
* checking installed package size ... NOTE
installed size is 225.9Mb
sub-directories of 1Mb or more:
data 4.1Mb
extdata 221.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.1-data-experiment/meat/seq2pathway.data.Rcheck/00check.log’
for details.
seq2pathway.data.Rcheck/00install.out:
* installing *source* package ‘seq2pathway.data’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seq2pathway.data)
seq2pathway.data.Rcheck/seq2pathway.data-Ex.timings:
name | user | system | elapsed
|
Des_BP_list | 0.084 | 0.017 | 0.106 |
|
Des_CC_list | 0.035 | 0.003 | 0.040 |
|
Des_MF_list | 0.072 | 0.004 | 0.077 |
|
GO_BP_list | 0.168 | 0.012 | 0.184 |
|
GO_CC_list | 0.116 | 0.002 | 0.120 |
|
GO_GENCODE_df_hg_v19 | 0.029 | 0.011 | 0.041 |
|
GO_GENCODE_df_hg_v20 | 0.033 | 0.011 | 0.045 |
|
GO_GENCODE_df_mm_vM1 | 0.032 | 0.010 | 0.044 |
|
GO_GENCODE_df_mm_vM3 | 0.022 | 0.009 | 0.032 |
|
GO_MF_list | 0.055 | 0.010 | 0.065 |
|
Msig_GENCODE_df_hg_v19 | 0.033 | 0.010 | 0.044 |
|
Msig_GENCODE_df_hg_v20 | 0.039 | 0.010 | 0.051 |
|
Msig_GENCODE_df_mm_vM1 | 0.025 | 0.010 | 0.037 |
|
Msig_GENCODE_df_mm_vM3 | 0.036 | 0.011 | 0.047 |
|
gencode_coding | 0.825 | 0.016 | 0.842 |
|