Aaron Lun
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BiocNeighbors |
| Branch: RELEASE_3_10 |
| Last Commit: 1fcb470 |
| Last Changed Date: 2020-02-29 00:44:32 -0400 (Sat, 29 Feb 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:14:27 -0400 (Wed, 15 Apr 2020).
| Package 153/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocNeighbors 1.4.2 Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: BiocNeighbors |
| Version: 1.4.2 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL BiocNeighbors |
| StartedAt: 2020-04-14 18:32:15 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:33:54 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 98.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL BiocNeighbors
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘BiocNeighbors’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c annoy.cpp -o annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c build_annoy.cpp -o build_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c build_hnsw.cpp -o build_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c build_vptree.cpp -o build_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c distances.cpp -o distances.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c find_annoy.cpp -o find_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c find_hnsw.cpp -o find_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c find_kmknn.cpp -o find_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c find_vptree.cpp -o find_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c hnsw.cpp -o hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of ‘Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]’:
kmknn.cpp:218:16: required from here
kmknn.h:37:31: warning: ‘Kmknn<BNManhattan>::centers’ will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^~~~~~~
kmknn.h:33:20: warning: ‘neighbor_queue Kmknn<BNManhattan>::nearest’ [-Wreorder]
neighbor_queue nearest;
^~~~~~~
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^~~~~~~~~~~~~~~
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of ‘Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]’:
kmknn.cpp:219:16: required from here
kmknn.h:37:31: warning: ‘Kmknn<BNEuclidean>::centers’ will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^~~~~~~
kmknn.h:33:20: warning: ‘neighbor_queue Kmknn<BNEuclidean>::nearest’ [-Wreorder]
neighbor_queue nearest;
^~~~~~~
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c query_annoy.cpp -o query_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c query_hnsw.cpp -o query_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c query_kmknn.cpp -o query_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c query_vptree.cpp -o query_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include -fpic -g -O2 -Wall -c vptree.cpp -o vptree.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o BiocNeighbors.so RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocNeighbors)