Leonardo Collado-Torres
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/regionReport |
| Branch: RELEASE_3_10 |
| Last Commit: 79e1a7b |
| Last Changed Date: 2020-03-16 11:16:19 -0400 (Mon, 16 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:09:15 -0400 (Wed, 15 Apr 2020).
| Package 1409/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| regionReport 1.20.1 Leonardo Collado-Torres
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | [ ERROR ] | skipped | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: regionReport |
| Version: 1.20.1 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data regionReport |
| StartedAt: 2020-04-14 21:08:20 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 21:13:08 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 287.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data regionReport
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* checking for file ‘regionReport/DESCRIPTION’ ... OK
* preparing ‘regionReport’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bumphunterExample.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata.
Falling back to 'bumphunterExampleOutput.utf8'
--- finished re-building ‘bumphunterExample.Rmd’
--- re-building ‘regionReport.Rmd’ using rmarkdown
Warning in citation("TxDb.Hsapiens.UCSC.hg19.knownGene") :
no date field in DESCRIPTION file of package 'TxDb.Hsapiens.UCSC.hg19.knownGene'
Writing 34 Bibtex entries ... OK
Results written to file 'regionReportRef.bib'
Quitting from lines 224-229 (basicExploration.Rmd)
Error: processing vignette 'regionReport.Rmd' failed with diagnostics:
R: unable to get registry ID `cache:hosts' @ error/registry.c/GetImageRegistry/202
--- failed re-building ‘regionReport.Rmd’
"/home/biocbuild/bbs-3.10-bioc/R/bin/Rscript" -e "library(rmarkdown); render('regionReport.Rmd')"
Attaching package: ‘BiocStyle’
The following objects are masked from ‘package:rmarkdown’:
html_document, md_document, pdf_document
processing file: regionReport.Rmd
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label: citation
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label: vignetteSetup (with options)
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$ echo : logi FALSE
$ message: logi FALSE
$ warning: logi FALSE
Writing 34 Bibtex entries ... OK
Results written to file 'regionReportRef.bib'
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$ warning: logi FALSE
Quitting from lines 224-229 (basicExploration.Rmd)
Error in magick_image_trim(image, fuzz) :
R: unable to get registry ID `cache:hosts' @ error/registry.c/GetImageRegistry/202
Calls: render ... <Anonymous> -> assert_image -> <Anonymous> -> magick_image_trim
In addition: Warning message:
In citation("TxDb.Hsapiens.UCSC.hg19.knownGene") :
no date field in DESCRIPTION file of package 'TxDb.Hsapiens.UCSC.hg19.knownGene'
Execution halted
Makefile:12: recipe for target 'regionReport.html' failed
make: *** [regionReport.html] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted