| Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:10:41 -0400 (Wed, 15 Apr 2020).
| Package 323/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Jacob Carey
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | ERROR | skipped | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: CNPBayes |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL CNPBayes |
| StartedAt: 2020-04-14 18:34:19 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:35:56 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 96.9 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL CNPBayes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘CNPBayes’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c miscfunctions.cpp -o miscfunctions.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c multibatch.cpp -o multibatch.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c multibatch_reduced.cpp -o multibatch_reduced.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c pooledvar_reduced.cpp -o pooledvar_reduced.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c triomodel.cpp -o triomodel.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o CNPBayes.so RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.10-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-CNPBayes/00new/CNPBayes/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading No methods found in package ‘SummarizedExperiment’ for request: ‘SummarizedExperiment’ when loading ‘CNPBayes’ Creating a new generic function for ‘alpha’ in package ‘CNPBayes’ in method for ‘convergence’ with signature ‘"MultiBatchList"’: no definition for class “MultiBatchList” Creating a generic function from function ‘sigma’ in package ‘CNPBayes’ Note: wrong number of arguments to '/' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘SummarizedExperiment’ for request: ‘SummarizedExperiment’ when loading ‘CNPBayes’ Warning: Package 'CNPBayes' is deprecated and will be removed from Bioconductor version 3.11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location No methods found in package ‘SummarizedExperiment’ for request: ‘SummarizedExperiment’ when loading ‘CNPBayes’ Warning: Package 'CNPBayes' is deprecated and will be removed from Bioconductor version 3.11 ** testing if installed package keeps a record of temporary installation path * DONE (CNPBayes)