Chris Barnes
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/CNVtools |
| Branch: RELEASE_3_10 |
| Last Commit: bf3f720 |
| Last Changed Date: 2019-10-29 13:08:10 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:00 -0400 (Wed, 15 Apr 2020).
| Package 330/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CNVtools 1.80.0 Chris Barnes
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CNVtools |
| Version: 1.80.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CNVtools_1.80.0.tar.gz && rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVtools.buildbin-libdir CNVtools_1.80.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CNVtools_1.80.0.zip && rm CNVtools_1.80.0.tar.gz CNVtools_1.80.0.zip |
| StartedAt: 2020-04-14 18:45:40 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:46:36 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 56.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CNVtools_1.80.0.tar.gz && rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVtools.buildbin-libdir CNVtools_1.80.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CNVtools_1.80.0.zip && rm CNVtools_1.80.0.tar.gz CNVtools_1.80.0.zip
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install for i386
* installing *source* package 'CNVtools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c fitmodel.cpp -o fitmodel.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c glm_test.cpp -o glm_test.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c mla.cpp -o mla.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c routine.cpp -o routine.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CNVtools.dll tmp.def fitmodel.o glm_test.o mla.o routine.o zeroin.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CNVtools.buildbin-libdir/00LOCK-CNVtools/00new/CNVtools/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CNVtools'
finding HTML links ... done
A112 html
CNV.fitModel html
CNVtest.binary html
CNVtest.binary.T html
CNVtest.qt html
CNVtest.qt.T html
CNVtest.select.model html
CNVtools-package html
EM.starting.point html
ExpandData html
apply.ldf html
apply.pca html
cnv.plot html
compact.data.frame html
get.model.spec html
getQualityScore html
getparams html
qt.plot html
test.posterior html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CNVtools' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c fitmodel.cpp -o fitmodel.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c glm_test.cpp -o glm_test.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c mla.cpp -o mla.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c routine.cpp -o routine.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CNVtools.dll tmp.def fitmodel.o glm_test.o mla.o routine.o zeroin.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CNVtools.buildbin-libdir/CNVtools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVtools' as CNVtools_1.80.0.zip
* DONE (CNVtools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CNVtools' successfully unpacked and MD5 sums checked