August Guang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/qckitfastq |
| Branch: RELEASE_3_10 |
| Last Commit: 23592da |
| Last Changed Date: 2019-10-29 13:11:32 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:48:54 -0400 (Wed, 15 Apr 2020).
| Package 1337/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qckitfastq 1.2.0 August Guang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | [ ERROR ] | ERROR | skipped | skipped |
| Package: qckitfastq |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qckitfastq |
| StartedAt: 2020-04-14 18:39:27 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:40:02 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 35.4 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qckitfastq
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘qckitfastq’ ...
** using staged installation
** libs
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c calc_adapter_content.cpp -o calc_adapter_content.o
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available.
^
/usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
^
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available.
^
/usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
^
2 errors generated.
make: *** [calc_adapter_content.o] Error 1
ERROR: compilation failed for package ‘qckitfastq’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/qckitfastq’