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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data systemPipeR
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* checking for file ‘systemPipeR/DESCRIPTION’ ... OK
* preparing ‘systemPipeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
NB: this package now depends on R (>= 3.5.0)
WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/CWL_structure_912745f0fb96df9f201dba8d6df7d9f5.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/CWL_structure_912745f0fb96df9f201dba8d6df7d9f5.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/SYSargs2_structure_ce78ab6ebdbf800523468d86ab040416.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/SYSargs2_structure_ce78ab6ebdbf800523468d86ab040416.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats1_a16b44a1e9cc1b8e753679c28b6e0254.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats1_a16b44a1e9cc1b8e753679c28b6e0254.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats2_f5ce8faa22eb413d61d2296d748cab1b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats2_f5ce8faa22eb413d61d2296d748cab1b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_455dc0409a9619e64651979870d0c02b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_455dc0409a9619e64651979870d0c02b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_66360e0d6a837a26c69b9389cfb53622.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_66360e0d6a837a26c69b9389cfb53622.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_SYSargs2_74c7561301693b5e5c582932515bdf04.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_SYSargs2_74c7561301693b5e5c582932515bdf04.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_cluster_b357401bad22ee7e10de474b4e543aa3.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_cluster_b357401bad22ee7e10de474b4e543aa3.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_index_1b3f547356430b130cb77dfd135381a1.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_index_1b3f547356430b130cb77dfd135381a1.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_sm_c6be7c308fd6a8650d51c31aa5e4a483.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie2_sm_c6be7c308fd6a8650d51c31aa5e4a483.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie_index_7af39f57d84ffcca1bd03c658a4f955a.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bowtie_index_7af39f57d84ffcca1bd03c658a4f955a.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bwa-pe_alignment_f4a349ce8e61d628dbbf5536d74fd0c9.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bwa-pe_alignment_f4a349ce8e61d628dbbf5536d74fd0c9.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bwa_index_af9e0bd698bf5dcb118d8ac7661ea026.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/bwa_index_af9e0bd698bf5dcb118d8ac7661ea026.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/clusterRun_args_cee6e6ff35b2144293f8d1aa969049d6.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/clusterRun_args_cee6e6ff35b2144293f8d1aa969049d6.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/cmdlist_b6ec4530dc971541e8789fc540c01197.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/cmdlist_b6ec4530dc971541e8789fc540c01197.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/command-line_6acabb610466fd4920d81c0516e8b46b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/command-line_6acabb610466fd4920d81c0516e8b46b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/comment_lines_5a00fb0a6eb8c8ab5ceb9b96d8ef28bc.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/comment_lines_5a00fb0a6eb8c8ab5ceb9b96d8ef28bc.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-pe_5d71136134216d4cff9e9c08bdc7e306.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-pe_5d71136134216d4cff9e9c08bdc7e306.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-se_c0fc51d72aaf48cdd619dc33470be675.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-se_c0fc51d72aaf48cdd619dc33470be675.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/create_txdb_fe73f7844f43326ac595eb2f562c33ce.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/create_txdb_fe73f7844f43326ac595eb2f562c33ce.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_fffa51d0a1b35f6b92d34f0fcd759d85.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_fffa51d0a1b35f6b92d34f0fcd759d85.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/deseq2_deg_counts_fa51e4b143cc1c3e7e0248ddb3e7fb96.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/deseq2_deg_counts_fa51e4b143cc1c3e7e0248ddb3e7fb96.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/deseq2_wrapper_626a2713f700f49fe9fe3a2df316420b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/deseq2_wrapper_626a2713f700f49fe9fe3a2df316420b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/documentation_4943d93792ab346cbb18e0208290d499.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/documentation_4943d93792ab346cbb18e0208290d499.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_deg_counts_081cb46ff71c5c057708e440bc2972a5.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_deg_counts_081cb46ff71c5c057708e440bc2972a5.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_deg_stats_1d9fbdc78ffbeadb18993024a7ae5901.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_deg_stats_1d9fbdc78ffbeadb18993024a7ae5901.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_wrapper_74d7192a3e987f5ab40a5a96fec86f46.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/edger_wrapper_74d7192a3e987f5ab40a5a96fec86f46.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_8488658ab1a0ed703097bd7f4b02000e.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_8488658ab1a0ed703097bd7f4b02000e.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_a959e291b0d171aec1aec0586c2dab62.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_a959e291b0d171aec1aec0586c2dab62.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_82b3371cd246ef75330d17af3451117f.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_82b3371cd246ef75330d17af3451117f.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_e9b8131b27a16a2990b31a7dac7692d6.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_e9b8131b27a16a2990b31a7dac7692d6.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_2af72e3a184d01a22e2a8029a9523a16.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_2af72e3a184d01a22e2a8029a9523a16.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_06d0787ecba93ce0e77b10ac800f2090.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_06d0787ecba93ce0e77b10ac800f2090.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_bb27e40c0d60c6c902bbc1b76752b375.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_bb27e40c0d60c6c902bbc1b76752b375.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_48598abeae82486c905950dd7f41b3f9.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_48598abeae82486c905950dd7f41b3f9.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/get_go_biomart_2d806388fc9dee30b8f0ffd1dbf17093.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/get_go_biomart_2d806388fc9dee30b8f0ffd1dbf17093.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/go_enrichment_15824a8d44beeadf8c59b12b5361214e.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/go_enrichment_15824a8d44beeadf8c59b12b5361214e.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/gsnap_22276a1e9014f3c682f97209882fb311.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/gsnap_22276a1e9014f3c682f97209882fb311.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_b4520e10f9c6b41afede8f31f0ac0fb4.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_b4520e10f9c6b41afede8f31f0ac0fb4.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_SYSargs2_object_6eb32a605fe69252e505dcbedf58f3d7.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_SYSargs2_object_6eb32a605fe69252e505dcbedf58f3d7.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_alignment_15a9a953630266aaafa0c42f2ab87e14.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_alignment_15a9a953630266aaafa0c42f2ab87e14.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_index_b4bd776a91dd02075f2135585ad5d319.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/hisat_index_b4bd776a91dd02075f2135585ad5d319.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/igv_9cfb72732ee6e5c4a48ea877983f38cb.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/igv_9cfb72732ee6e5c4a48ea877983f38cb.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/install_e43706bd593ab3b27d4ed5ca0a080c54.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/install_e43706bd593ab3b27d4ed5ca0a080c54.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/load_package_a9e3318732b54cffb838af8d8e152569.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/load_package_a9e3318732b54cffb838af8d8e152569.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/names_WF_0ccceb37ecd640f98852eb8fc59f367c.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/names_WF_0ccceb37ecd640f98852eb8fc59f367c.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/output_48a2311565fd7e68279f6859b1dbfe57.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/output_48a2311565fd7e68279f6859b1dbfe57.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/output_WF_56fb43e02f6d93d93aa64d247f1ad2d4.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/output_WF_56fb43e02f6d93d93aa64d247f1ad2d4.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/param_import_f436e04e9518391e344d2fecc2061bea.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/param_import_f436e04e9518391e344d2fecc2061bea.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/param_structure_604bcb00ed9998aca9c0feffdd75b1f1.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/param_structure_604bcb00ed9998aca9c0feffdd75b1f1.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/plot_go_enrichment_bf9cb8abcf9b3b28c1f749d07703ff3c.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/plot_go_enrichment_bf9cb8abcf9b3b28c1f749d07703ff3c.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/preprocessing_8d558cc20f5cd04f2f8eeb34297e8860.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/preprocessing_8d558cc20f5cd04f2f8eeb34297e8860.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/process_monitoring_ee41b19c0cc8e98c142af9145bc8cfda.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/process_monitoring_ee41b19c0cc8e98c142af9145bc8cfda.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_292fe26506317bf771a0b9982c3de0fa.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_292fe26506317bf771a0b9982c3de0fa.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_9caced960975322e04606de6f1ec73da.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_9caced960975322e04606de6f1ec73da.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_bdb56187b91e721656769fbd7a8ba606.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_bdb56187b91e721656769fbd7a8ba606.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/rsubread_d4a2f4389240c2c3623761afb191651b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/rsubread_d4a2f4389240c2c3623761afb191651b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/runCommandline_align_1ad9b940944860bc3af6fc9e2b924215.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/runCommandline_align_1ad9b940944860bc3af6fc9e2b924215.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sample_tree_rlog_9aa45659584da65cbebb9f7d83ce7999.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sample_tree_rlog_9aa45659584da65cbebb9f7d83ce7999.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sample_tree_rpkm_da9e947d03a43f65866c1fff96760d5a.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sample_tree_rpkm_da9e947d03a43f65866c1fff96760d5a.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sessionInfo_ffd9b464782280f13fa45db1804075c4.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sessionInfo_ffd9b464782280f13fa45db1804075c4.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/setup_480815246725134a51c508645b96e155.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/setup_480815246725134a51c508645b96e155.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/subset_02278be359375d1b364b3b08507ae7e2.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/subset_02278be359375d1b364b3b08507ae7e2.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_access2_df1b219a2059c35674cea6a467b8665d.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_access2_df1b219a2059c35674cea6a467b8665d.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_access_fdc4d707fb5666f801c1b8632784cac1.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_access_fdc4d707fb5666f801c1b8632784cac1.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_json_226c101ff7435699cb8b5ec5c245a273.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/sysarg_json_226c101ff7435699cb8b5ec5c245a273.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetsPE_ee60d477c7d64b05e0fabb1d4f132c55.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetsPE_ee60d477c7d64b05e0fabb1d4f132c55.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetsSE_cbff5b3ea3404f072c6f4ec7ef1440fc.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetsSE_cbff5b3ea3404f072c6f4ec7ef1440fc.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetscomp_49a8ed4b2e61644435ef4c2102f1b204.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/targetscomp_49a8ed4b2e61644435ef4c2102f1b204.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_90606256d2e83d491f5db2852cf7abd1.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_90606256d2e83d491f5db2852cf7abd1.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_parallel_babbf2203c259bbdbbd6a8cd116e99aa.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_parallel_babbf2203c259bbdbbd6a8cd116e99aa.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/trimGalore_e3e3887dc05bf0076ed9290158a113c1.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/trimGalore_e3e3887dc05bf0076ed9290158a113c1.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/trimmomatic_373464b23627d90539273a5feb877040.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/trimmomatic_373464b23627d90539273a5feb877040.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/vennplot_d6d1d4ec4580b9b31480c99b1546258c.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/vennplot_d6d1d4ec4580b9b31480c99b1546258c.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bcd17cc2b6403bdfdd685f26bd9ddf1b.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bcd17cc2b6403bdfdd685f26bd9ddf1b.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bowtiePE_f7eb17b0860080672673584e28e7a9f9.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bowtiePE_f7eb17b0860080672673584e28e7a9f9.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bwaPE_04892e5d334b3f2aa68d5ca9bbb6f1fd.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bwaPE_04892e5d334b3f2aa68d5ca9bbb6f1fd.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_gsnap_b7750de88c5627c84bb2b7b488328338.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_gsnap_b7750de88c5627c84bb2b7b488328338.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_rsubread_d7497551e934f04ab7aec71721240ce4.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_rsubread_d7497551e934f04ab7aec71721240ce4.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_tophat2PE_79dd38bcbb4585c89100a016581ad47c.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_tophat2PE_79dd38bcbb4585c89100a016581ad47c.rdx' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/yaml_structure_e79b3769d12f235b8aca76310ecac506.RData' WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: 'systemPipeR/vignettes/systemPipeR_cache/html/yaml_structure_e79b3769d12f235b8aca76310ecac506.rdx'
* building 'systemPipeR_1.20.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/SYSargs2_structure_ce78ab6ebdbf800523468d86ab040416.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_455dc0409a9619e64651979870d0c02b.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_455dc0409a9619e64651979870d0c02b.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_455dc0409a9619e64651979870d0c02b.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_66360e0d6a837a26c69b9389cfb53622.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_66360e0d6a837a26c69b9389cfb53622.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/align_stats_parallel_cluster_66360e0d6a837a26c69b9389cfb53622.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-pe_5d71136134216d4cff9e9c08bdc7e306.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-pe_5d71136134216d4cff9e9c08bdc7e306.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-pe_5d71136134216d4cff9e9c08bdc7e306.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-se_c0fc51d72aaf48cdd619dc33470be675.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-se_c0fc51d72aaf48cdd619dc33470be675.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/construct_SYSargs2_trim-se_c0fc51d72aaf48cdd619dc33470be675.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_fffa51d0a1b35f6b92d34f0fcd759d85.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_fffa51d0a1b35f6b92d34f0fcd759d85.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/custom_preprocessing_fffa51d0a1b35f6b92d34f0fcd759d85.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/deseq2_deg_counts_fa51e4b143cc1c3e7e0248ddb3e7fb96.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_a959e291b0d171aec1aec0586c2dab62.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_a959e291b0d171aec1aec0586c2dab62.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_cluster_a959e291b0d171aec1aec0586c2dab62.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_82b3371cd246ef75330d17af3451117f.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_82b3371cd246ef75330d17af3451117f.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/fastq_quality_parallel_single_82b3371cd246ef75330d17af3451117f.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_e9b8131b27a16a2990b31a7dac7692d6.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_e9b8131b27a16a2990b31a7dac7692d6.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genChip_workflow_single_e9b8131b27a16a2990b31a7dac7692d6.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_2af72e3a184d01a22e2a8029a9523a16.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_2af72e3a184d01a22e2a8029a9523a16.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRibo_workflow_single_2af72e3a184d01a22e2a8029a9523a16.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_bb27e40c0d60c6c902bbc1b76752b375.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_bb27e40c0d60c6c902bbc1b76752b375.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genRna_workflow_single_bb27e40c0d60c6c902bbc1b76752b375.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_48598abeae82486c905950dd7f41b3f9.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_48598abeae82486c905950dd7f41b3f9.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/genVar_workflow_single_48598abeae82486c905950dd7f41b3f9.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_b4520e10f9c6b41afede8f31f0ac0fb4.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_b4520e10f9c6b41afede8f31f0ac0fb4.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hierarchical_clustering_b4520e10f9c6b41afede8f31f0ac0fb4.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hisat_SYSargs2_object_6eb32a605fe69252e505dcbedf58f3d7.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hisat_SYSargs2_object_6eb32a605fe69252e505dcbedf58f3d7.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/hisat_SYSargs2_object_6eb32a605fe69252e505dcbedf58f3d7.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/plot_go_enrichment_bf9cb8abcf9b3b28c1f749d07703ff3c.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/process_monitoring_ee41b19c0cc8e98c142af9145bc8cfda.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_292fe26506317bf771a0b9982c3de0fa.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_292fe26506317bf771a0b9982c3de0fa.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_mirna_292fe26506317bf771a0b9982c3de0fa.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_9caced960975322e04606de6f1ec73da.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_9caced960975322e04606de6f1ec73da.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multicore_9caced960975322e04606de6f1ec73da.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_bdb56187b91e721656769fbd7a8ba606.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_bdb56187b91e721656769fbd7a8ba606.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/read_counting_multinode_bdb56187b91e721656769fbd7a8ba606.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/runCommandline_align_1ad9b940944860bc3af6fc9e2b924215.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/runCommandline_align_1ad9b940944860bc3af6fc9e2b924215.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/runCommandline_align_1ad9b940944860bc3af6fc9e2b924215.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_parallel_babbf2203c259bbdbbd6a8cd116e99aa.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_parallel_babbf2203c259bbdbbd6a8cd116e99aa.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/tophat2-pe_parallel_babbf2203c259bbdbbd6a8cd116e99aa.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bowtiePE_f7eb17b0860080672673584e28e7a9f9.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bowtiePE_f7eb17b0860080672673584e28e7a9f9.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bowtiePE_f7eb17b0860080672673584e28e7a9f9.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bwaPE_04892e5d334b3f2aa68d5ca9bbb6f1fd.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bwaPE_04892e5d334b3f2aa68d5ca9bbb6f1fd.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_bwaPE_04892e5d334b3f2aa68d5ca9bbb6f1fd.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_gsnap_b7750de88c5627c84bb2b7b488328338.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_gsnap_b7750de88c5627c84bb2b7b488328338.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_gsnap_b7750de88c5627c84bb2b7b488328338.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_rsubread_d7497551e934f04ab7aec71721240ce4.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_rsubread_d7497551e934f04ab7aec71721240ce4.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_rsubread_d7497551e934f04ab7aec71721240ce4.rdx'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_tophat2PE_79dd38bcbb4585c89100a016581ad47c.RData'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_tophat2PE_79dd38bcbb4585c89100a016581ad47c.rdb'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'systemPipeR/vignettes/systemPipeR_cache/html/writeTargetsout_tophat2PE_79dd38bcbb4585c89100a016581ad47c.rdx'
