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BUILD report for STRINGdb on celaya2

This page was generated on 2020-01-16 13:37:50 -0500 (Thu, 16 Jan 2020).

Package 1673/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
STRINGdb 1.99.5
Damian Szklarczyk
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/STRINGdb
Branch: master
Last Commit: a246a7b
Last Changed Date: 2020-01-11 11:26:40 -0500 (Sat, 11 Jan 2020)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: STRINGdb
Version: 1.99.5
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
StartedAt: 2020-01-15 21:14:22 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 21:14:36 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 14.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
###
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* checking for file ‘STRINGdb/DESCRIPTION’ ... OK
* preparing ‘STRINGdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘STRINGdb.Rnw’ using Sweave
trying URL 'https://stringdb-static.org/download/protein.aliases.v11.0/9606.protein.aliases.v11.0.txt.gz'
Content type 'application/x-gzip' length 13253303 bytes (12.6 MB)
==================================================
downloaded 12.6 MB


Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics:
 chunk 4 (label = map) 
Error in get_proteins() : could not find function "get_proteins"

--- failed re-building ‘STRINGdb.Rnw’

SUMMARY: processing the following file failed:
  ‘STRINGdb.Rnw’

Error: Vignette re-building failed.
Execution halted