Hector Corrada Bravo
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/epivizrStandalone |
| Branch: RELEASE_3_11 |
| Last Commit: dbb8d04 |
| Last Changed Date: 2020-04-27 14:57:40 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:32 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE epivizrStandalone PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 560/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| epivizrStandalone 1.16.0 Hector Corrada Bravo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: epivizrStandalone |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/epivizrStandalone_1.16.0.tar.gz && rm -rf epivizrStandalone.buildbin-libdir && mkdir epivizrStandalone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrStandalone.buildbin-libdir epivizrStandalone_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL epivizrStandalone_1.16.0.zip && rm epivizrStandalone_1.16.0.tar.gz epivizrStandalone_1.16.0.zip |
| StartedAt: 2020-10-16 19:27:30 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:28:55 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 84.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/epivizrStandalone_1.16.0.tar.gz && rm -rf epivizrStandalone.buildbin-libdir && mkdir epivizrStandalone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrStandalone.buildbin-libdir epivizrStandalone_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL epivizrStandalone_1.16.0.zip && rm epivizrStandalone_1.16.0.tar.gz epivizrStandalone_1.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'epivizrStandalone' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** help
*** installing help indices
converting help for package 'epivizrStandalone'
finding HTML links ... done
setStandalone html
startStandalone html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGCZuLG/R.INSTALL2b2472c66bad/epivizrStandalone/man/startStandalone.Rd:13: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGCZuLG/R.INSTALL2b2472c66bad/epivizrStandalone/man/startStandalone.Rd:37: file link 'EpivizApp' in package 'epivizr' does not exist and so has been treated as a topic
startStandaloneApp html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGCZuLG/R.INSTALL2b2472c66bad/epivizrStandalone/man/startStandaloneApp.Rd:14: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGCZuLG/R.INSTALL2b2472c66bad/epivizrStandalone/man/startStandaloneApp.Rd:35: file link 'EpivizApp' in package 'epivizr' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'epivizrStandalone' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
* MD5 sums
packaged installation of 'epivizrStandalone' as epivizrStandalone_1.16.0.zip
* DONE (epivizrStandalone)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'epivizrStandalone' successfully unpacked and MD5 sums checked