| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE made4 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 973/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| made4 1.62.0 Aedin Culhane
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ ERROR ] | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK |
| Package: made4 |
| Version: 1.62.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:made4.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings made4_1.62.0.tar.gz |
| StartedAt: 2020-10-17 05:36:20 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:39:35 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 195.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: made4.Rcheck |
| Warnings: NA |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:made4.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings made4_1.62.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/made4.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.62.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'ade4', 'RColorBrewer', 'gplots', 'scatterplot3d', 'Biobase',
'SummarizedExperiment'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'made4' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:15: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:30: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:21: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.Rd:16: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.jackknife.Rd:37: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:19: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:45: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:63: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:25: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:29: missing file link 'vsn'
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/heatplot.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/ord.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/overview.Rd:10: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:45: file link 's.groups' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:46: file link 's.match.col' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/prettyDend.Rd:11: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.cia' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:17: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:38: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:47: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/made4.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Missing or unexported object: 'RColorBrewer::colorRampPalette'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot.bga: warning in s.var(dudi.bga$bet$ls, xax = axis1, yax = axis2,
col = as.vector(factor(dudi.bga$fac, labels = arraycol)), ...):
partial argument match of 'col' to 'colpoints'
plot.ord: warning in s.var(dudi.ord$co, xax = axis1, yax = axis2, col =
cols.array, label = arraylabels, ...): partial argument match of
'col' to 'colpoints'
plot.ord: warning in plotgenes(dudi.ord$li, genelabels = genelabels,
nlab = nlab, col = genecol, axis1 = axis1, axis2 = axis2, ...):
partial argument match of 'col' to 'colpoints'
* checking Rd files ... NOTE
prepare_Rd: array2ade4.Rd:38: Dropping empty section \references
prepare_Rd: between.graph.Rd:40-42: Dropping empty section \value
prepare_Rd: between.graph.Rd:47: Dropping empty section \note
prepare_Rd: checkfac.Rd:15-16: Dropping empty section \details
prepare_Rd: checkfac.Rd:22: Dropping empty section \note
prepare_Rd: checkfac.Rd:23: Dropping empty section \seealso
prepare_Rd: checkfac.Rd:24-25: Dropping empty section \examples
prepare_Rd: chime3D.Rd:56: Dropping empty section \seealso
prepare_Rd: chime3D.Rd:57-59: Dropping empty section \examples
prepare_Rd: cia.Rd:106: Dropping empty section \note
prepare_Rd: commonMap.Rd:29-30: Dropping empty section \value
prepare_Rd: commonMap.Rd:31: Dropping empty section \references
prepare_Rd: do3d.Rd:73: Dropping empty section \note
prepare_Rd: do3d.Rd:71: Dropping empty section \references
prepare_Rd: dudi.rwcoa.Rd:39-41: Dropping empty section \examples
prepare_Rd: forrwcoa.Rd:38-40: Dropping empty section \examples
prepare_Rd: genes.Rd:28: Dropping empty section \value
prepare_Rd: genes.Rd:32-33: Dropping empty section \examples
prepare_Rd: genes1d.Rd:34: Dropping empty section \references
prepare_Rd: getdata.Rd:36: Dropping empty section \examples
prepare_Rd: graph1D.Rd:33-34: Dropping empty section \details
prepare_Rd: graph1D.Rd:35-37: Dropping empty section \value
prepare_Rd: graph1D.Rd:40: Dropping empty section \note
prepare_Rd: graph1D.Rd:38: Dropping empty section \references
prepare_Rd: html3D.Rd:74: Dropping empty section \seealso
prepare_Rd: jmol3D.Rd:37: Dropping empty section \seealso
prepare_Rd: jmol3D.Rd:38-39: Dropping empty section \examples
prepare_Rd: ord.Rd:93: Dropping empty section \references
prepare_Rd: overview.Rd:26: Dropping empty section \value
prepare_Rd: overview.Rd:29: Dropping empty section \note
prepare_Rd: overview.Rd:27: Dropping empty section \references
prepare_Rd: prettyDend.Rd:27: Dropping empty section \value
prepare_Rd: prettyDend.Rd:30: Dropping empty section \note
prepare_Rd: prettyDend.Rd:28: Dropping empty section \references
prepare_Rd: sumstats.Rd:52: Dropping empty section \note
prepare_Rd: sumstats.Rd:50: Dropping empty section \references
prepare_Rd: sumstats.Rd:56: Dropping empty section \seealso
prepare_Rd: topgenes.Rd:40: Dropping empty section \note
prepare_Rd: topgenes.Rd:38: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'getdata.Rd':
'[vsn:vsn]{vsn}'
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'overview':
'...'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'made4-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: array2ade4
> ### Title: Converts microarray input data into a data frame suitable for
> ### analysis in ADE4.
> ### Aliases: array2ade4
> ### Keywords: manip
>
> ### ** Examples
>
> library(affy)
> data(geneData)
> class(geneData)
[1] "matrix" "array"
> dim(geneData)
[1] 500 26
> dim(array2ade4(geneData))
Error in switch(class(arraydata), matrix = { :
EXPR must be a length 1 vector
Calls: array2ade4 -> getdata
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'made4-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: array2ade4
> ### Title: Converts microarray input data into a data frame suitable for
> ### analysis in ADE4.
> ### Aliases: array2ade4
> ### Keywords: manip
>
> ### ** Examples
>
> library(affy)
> data(geneData)
> class(geneData)
[1] "matrix" "array"
> dim(geneData)
[1] 500 26
> dim(array2ade4(geneData))
Error in switch(class(arraydata), matrix = { :
EXPR must be a length 1 vector
Calls: array2ade4 -> getdata
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 3 WARNINGs, 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.11-bioc/meat/made4.Rcheck/00check.log'
for details.
made4.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/made4_1.62.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL made4_1.62.0.zip && rm made4_1.62.0.tar.gz made4_1.62.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 344k 100 344k 0 0 5364k 0 --:--:-- --:--:-- --:--:-- 5940k
install for i386
* installing *source* package 'made4' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'made4'
finding HTML links ... done
NCI60 html
array2ade4 html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:15: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/array2ade4.Rd:30: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bet.coinertia html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bet.coinertia.Rd:21: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
between.graph html
bga html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.Rd:16: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bga.jackknife html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.jackknife.Rd:37: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
bga.suppl html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:19: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:45: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/bga.suppl.Rd:63: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
checkfac html
chime3D html
cia html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/cia.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
commonMap html
comparelists html
do3d html
dudi.rwcoa html
forrwcoa html
genes html
genes1d html
getcol html
getdata html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:25: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/getdata.Rd:29: missing file link 'vsn'
graph1D html
heatplot html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/heatplot.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
html3D html
jmol3D html
khan html
ord html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/ord.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
overview html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/overview.Rd:10: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
plotarrays html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:45: file link 's.groups' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/plotarrays.Rd:46: file link 's.match.col' in package 'made4' does not exist and so has been treated as a topic
plotgenes html
prettyDend html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/prettyDend.Rd:11: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
randomiser html
s.var html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/s.var.Rd:65: file link 'plot.cia' in package 'made4' does not exist and so has been treated as a topic
sumstats html
suppl html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:17: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:38: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8ezGqt/R.INSTALL1eb8460d5685/made4/man/suppl.Rd:47: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
topgenes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'made4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'made4' as made4_1.62.0.zip
* DONE (made4)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'made4' successfully unpacked and MD5 sums checked
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made4.Rcheck/examples_i386/made4-Ex.timings
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made4.Rcheck/examples_x64/made4-Ex.timings
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