Arnaud Wolfer
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/peakPantheR |
| Branch: master |
| Last Commit: 35708e9 |
| Last Changed Date: 2019-10-29 13:43:42 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:55:25 -0500 (Thu, 16 Jan 2020).
| Package 1241/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| peakPantheR 1.1.0 Arnaud Wolfer
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: peakPantheR |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:peakPantheR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings peakPantheR_1.1.0.tar.gz |
| StartedAt: 2020-01-16 07:21:57 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 07:40:44 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 1127.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: peakPantheR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:peakPantheR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings peakPantheR_1.1.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/peakPantheR.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘peakPantheR/DESCRIPTION’ ... OK
* this is package ‘peakPantheR’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘peakPantheR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
peakPantheR_ROIStatistics 21.590 0.521 22.175
EICs-peakPantheRAnnotation-method 14.866 1.184 16.058
peakPantheR_parallelAnnotation 14.760 0.128 14.884
outputAnnotationDiagnostic-peakPantheRAnnotation-method 14.446 0.125 14.595
outputAnnotationResult-peakPantheRAnnotation-method 14.392 0.067 14.458
peakPantheR_singleFileSearch 5.405 0.084 5.489
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
peakPantheR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL peakPantheR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘peakPantheR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peakPantheR)
peakPantheR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-12-14 r77572) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(peakPantheR)
This is peakPantheR version 1.1.0
>
> test_check("peakPantheR")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 1245 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
687.573 7.303 930.504
peakPantheR.Rcheck/peakPantheR-Ex.timings
| name | user | system | elapsed | |
| EICs-peakPantheRAnnotation-method | 14.866 | 1.184 | 16.058 | |
| FIR-peakPantheRAnnotation-method | 0.468 | 0.045 | 0.512 | |
| ROI-peakPantheRAnnotation-method | 0.342 | 0.013 | 0.355 | |
| TIC-peakPantheRAnnotation-method | 0.381 | 0.017 | 0.398 | |
| acquisitionTime-peakPantheRAnnotation-method | 0.321 | 0.012 | 0.332 | |
| annotationDiagnosticPlots-peakPantheRAnnotation-method | 0.348 | 0.012 | 0.360 | |
| annotationParamsDiagnostic-peakPantheRAnnotation-method | 0.334 | 0.013 | 0.348 | |
| annotationTable-peakPantheRAnnotation-method | 0.473 | 0.017 | 0.489 | |
| cpdID-peakPantheRAnnotation-method | 0.393 | 0.014 | 0.408 | |
| cpdMetadata-peakPantheRAnnotation-method | 0.375 | 0.014 | 0.389 | |
| cpdName-peakPantheRAnnotation-method | 0.367 | 0.015 | 0.383 | |
| dataPoints-peakPantheRAnnotation-method | 0.363 | 0.013 | 0.377 | |
| filename-peakPantheRAnnotation-method | 0.382 | 0.012 | 0.395 | |
| filepath-peakPantheRAnnotation-method | 1.215 | 0.017 | 1.232 | |
| isAnnotated-peakPantheRAnnotation-method | 0.399 | 0.015 | 0.414 | |
| nbCompounds-peakPantheRAnnotation-method | 0.330 | 0.018 | 0.347 | |
| nbSamples-peakPantheRAnnotation-method | 0.294 | 0.014 | 0.308 | |
| outputAnnotationDiagnostic-peakPantheRAnnotation-method | 14.446 | 0.125 | 14.595 | |
| outputAnnotationResult-peakPantheRAnnotation-method | 14.392 | 0.067 | 14.458 | |
| peakFit-peakPantheRAnnotation-method | 0.398 | 0.015 | 0.413 | |
| peakPantheRAnnotation | 0.411 | 0.014 | 0.424 | |
| peakPantheR_ROIStatistics | 21.590 | 0.521 | 22.175 | |
| peakPantheR_loadAnnotationParamsCSV | 0.018 | 0.001 | 0.020 | |
| peakPantheR_parallelAnnotation | 14.760 | 0.128 | 14.884 | |
| peakPantheR_plotEICFit | 0.771 | 0.003 | 0.775 | |
| peakPantheR_plotPeakwidth | 1.020 | 0.042 | 1.064 | |
| peakPantheR_singleFileSearch | 5.405 | 0.084 | 5.489 | |
| peakTables-peakPantheRAnnotation-method | 0.399 | 0.013 | 0.412 | |
| resetAnnotation-peakPantheRAnnotation-method | 0.429 | 0.014 | 0.443 | |
| resetFIR-peakPantheRAnnotation-method | 0.009 | 0.001 | 0.010 | |
| spectraMetadata-peakPantheRAnnotation-method | 0.432 | 0.019 | 0.450 | |
| uROI-peakPantheRAnnotation-method | 0.389 | 0.014 | 0.403 | |
| uROIExist-peakPantheRAnnotation-method | 0.411 | 0.012 | 0.423 | |
| useFIR-peakPantheRAnnotation-method | 0.407 | 0.014 | 0.420 | |
| useUROI-peakPantheRAnnotation-method | 0.385 | 0.013 | 0.397 | |