transcriptR 1.15.0
Armen R. Karapetyan
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/transcriptR |
| Branch: master |
| Last Commit: eceedde |
| Last Changed Date: 2019-10-29 13:40:15 -0500 (Tue, 29 Oct 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data transcriptR
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* checking for file ‘transcriptR/DESCRIPTION’ ... OK
* preparing ‘transcriptR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘transcriptR.Rmd’ using rmarkdown
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
[WARNING] Could not parse YAML metadata at line 22 column 1: :3:9: Unexpected '
'
pandoc-citeproc: reference Wang not found
pandoc-citeproc: reference Morozova not found
pandoc-citeproc: reference Mitchell not found
pandoc-citeproc: reference Werner not found
pandoc-citeproc: reference Hah_GR not found
pandoc-citeproc: reference Gaidatzis not found
pandoc-citeproc: reference Zaghlool not found
pandoc-citeproc: reference Zhang not found
pandoc-citeproc: reference Hah_Cell not found
! Undefined control sequence.
l.76 \definecolor
{fgcolor}{rgb}{0.251, 0.251, 0.251}
Error: processing vignette 'transcriptR.Rmd' failed with diagnostics:
LaTeX failed to compile transcriptR.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See transcriptR.log for more info.
--- failed re-building ‘transcriptR.Rmd’
SUMMARY: processing the following file failed:
‘transcriptR.Rmd’
Error: Vignette re-building failed.
Execution halted