##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r DelayedMatrixStats -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DelayedMatrixStats
###
##############################################################################
##############################################################################


* checking for file 'DelayedMatrixStats/DESCRIPTION' ... OK
* preparing 'DelayedMatrixStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DelayedMatrixStatsOverview.Rmd' using rmarkdown
Loading required package: stats4
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum

Loading required package: rhdf5
Quitting from lines 46-54 (DelayedMatrixStatsOverview.Rmd) 
Error: processing vignette 'DelayedMatrixStatsOverview.Rmd' failed with diagnostics:
HDF5 dataset './.HDF5ArrayAUTO00001_dimnames/2' does not exist
--- failed re-building 'DelayedMatrixStatsOverview.Rmd'

SUMMARY: processing the following file failed:
  'DelayedMatrixStatsOverview.Rmd'

Error: Vignette re-building failed.
Execution halted