Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD BIN report for graph on tokay2

This page was generated on 2020-04-14 03:20:18 -0400 (Tue, 14 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE graph PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 45/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graph 1.65.2
Bioconductor Package Maintainer
Snapshot Date: 2020-04-13 17:00:10 -0400 (Mon, 13 Apr 2020)
URL: https://git.bioconductor.org/packages/graph
Branch: master
Last Commit: b60a41c
Last Changed Date: 2020-03-16 17:44:36 -0400 (Mon, 16 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]

Summary

Package: graph
Version: 1.65.2
Command: rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.65.2.tar.gz
StartedAt: 2020-04-14 01:19:38 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 01:20:42 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 64.3 seconds
RetCode: 0
Status:  OK  
PackageFile: graph_1.65.2.zip
PackageFileSize: 1.683 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.65.2.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'graph' ...
** using staged installation
** libs
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
/mingw32/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'graph'
    finding HTML links ... done
    DFS                                     html  
    IMCA                                    html  
    MAPKsig                                 html  
    MultiGraph-class                        html  
    acc-methods                             html  
    addEdge                                 html  
    addNode                                 html  
    adj-methods                             html  
    adjacencyMatrix                         html  
    apoptosisGraph                          html  
    attrData-class                          html  
    attrDataItem-methods                    html  
    attrDefaults-methods                    html  
    aveNumEdges                             html  
    biocRepos                               html  
    boundary                                html  
    calcProb                                html  
    calcSumProb                             html  
    clearNode                               html  
    clusterGraph-class                      html  
    clusteringCoefficient-methods           html  
    combineNodes                            html  
    defunct                                 html  
    distGraph-class                         html  
    duplicatedEdges                         html  
    edgeData-methods                        html  
    edgeDataDefaults-methods                html  
    edgeMatrix                              html  
    edgeSets                                html  
    edgeWeights                             html  
    fromGXL-methods                         html  
    graph-class                             html  
    graph2SparseM                           html  
    graphAM-class                           html  
    graphBAM-class                          html  
    graphExamples                           html  
    graphNEL-class                          html  
    inEdges                                 html  
    internal                                html  
    isAdjacent-methods                      html  
    isDirected-methods                      html  
    leaves                                  html  
    listEdges                               html  
    matrix2Graph                            html  
    mostEdges                               html  
    multigraph                              html  
    nodeData-methods                        html  
    nodeDataDefaults-methods                html  
    numNoEdges                              html  
    pancrCaIni                              html  
    randomEGraph                            html  
    randomGraph                             html  
    randomNodeGraph                         html  
    removeEdge                              html  
    removeNode                              html  
    renderInfo-class                        html  
    reverseEdgeDirections                   html  
    settings                                html  
    simpleEdge-class                        html  
    standardLabeling                        html  
    subGraph                                html  
    toDotR-methods                          html  
    toDotWithRI                             html  
    ugraph                                  html  
    validGraph                              html  
    write.tlp                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'graph' ...
** libs
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
/mingw64/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/graph.buildbin-libdir/graph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graph' as graph_1.65.2.zip
* DONE (graph)