Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD BIN report for zlibbioc on tokay2

This page was generated on 2020-04-15 03:20:09 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE zlibbioc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 89/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zlibbioc 1.33.1
Bioconductor Package Maintainer
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/zlibbioc
Branch: master
Last Commit: 11be463
Last Changed Date: 2020-01-23 21:51:48 -0400 (Thu, 23 Jan 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]

Summary

Package: zlibbioc
Version: 1.33.1
Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.33.1.tar.gz
StartedAt: 2020-04-14 23:31:42 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 23:33:12 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 89.4 seconds
RetCode: 0
Status:  OK  
PackageFile: zlibbioc_1.33.1.zip
PackageFileSize: 356.4 KiB

Command output

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###
### Running command:
###
###   rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.33.1.tar.gz
###
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install for i386

* installing *source* package 'zlibbioc' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
make -C zlib-1.2.5 -f"C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/i386/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpQ97gFi/R.INSTALLddc4c145952/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/i386/Makeconf:216: warning: ignoring old recipe for target '.c.o'
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
/mingw32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
/mingw32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
/mingw32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
/mingw32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
/mingw32/bin/strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpQ97gFi/R.INSTALLddc4c145952/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include"
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o
/mingw32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'zlibbioc'
    finding HTML links ... done
    pkgconfig                               html  
    zlibbioc-package                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -f"C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/x64/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmp25CQtd/R.INSTALL20741be1ae5/zlibbioc/src/zlib-1.2.5'
win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o'
C:/Users/BIOCTE~1/BBS-3~1.11-/R/etc/x64/Makeconf:216: warning: ignoring old recipe for target '.c.o'
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
/mingw64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
/mingw64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
/mingw64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
/mingw64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
/mingw64/bin/strip zlib1bioc.dll
make[1]: Leaving directory '/c/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/Rtmp25CQtd/R.INSTALL20741be1ae5/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o
/mingw64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.33.1.zip
* DONE (zlibbioc)