Back to Multiple platform build/check report for BioC 3.12
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CHECK report for Herper on merida1

This page was generated on 2021-05-06 12:35:14 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the Herper package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 826/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Herper 1.0.2  (landing page)
Thomas Carroll
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/Herper
Branch: RELEASE_3_12
Last Commit: 3ab5705
Last Changed Date: 2021-02-26 12:23:21 -0400 (Fri, 26 Feb 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: Herper
Version: 1.0.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Herper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Herper_1.0.2.tar.gz
StartedAt: 2021-05-06 02:36:09 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 02:52:54 -0400 (Thu, 06 May 2021)
EllapsedTime: 1005.3 seconds
RetCode: 0
Status:   OK  
CheckDir: Herper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Herper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Herper_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/Herper.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Herper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Herper’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Herper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
ListCondaEnvironments 183.402 48.425 229.532
UseEnvironments       193.899 14.260 213.864
install_CondaSysReqs  117.496 13.492 132.797
SaveEnvironments       34.652 14.125  52.943
install_CondaTools     28.475 17.602  47.927
ListCondaPackages      11.272  1.332  12.633
search_conda            8.566  1.103   9.894
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

Herper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Herper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘Herper’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Herper)

Tests output

Herper.Rcheck/tests/testthat.Rout


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Herper)
Loading required package: reticulate
> 
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh'
Content type 'application/x-sh' length 57112343 bytes (54.5 MB)
==================================================
downloaded 54.5 MB

PREFIX=/tmp/RtmpK2ITW6/Test
Unpacking payload ...

  0%|          | 0/34 [00:00<?, ?it/s]
Extracting : libffi-3.3-hb1e8313_2.conda:   0%|          | 0/34 [00:00<?, ?it/s]
Extracting : libffi-3.3-hb1e8313_2.conda:   3%|▎         | 1/34 [00:00<00:23,  1.43it/s]
Extracting : chardet-3.0.4-py38hecd8cb5_1003.conda:   3%|▎         | 1/34 [00:00<00:23,  1.43it/s]
Extracting : chardet-3.0.4-py38hecd8cb5_1003.conda:   6%|▌         | 2/34 [00:00<00:17,  1.84it/s]
Extracting : ruamel_yaml-0.15.87-py38haf1e3a3_1.conda:   6%|▌         | 2/34 [00:00<00:17,  1.84it/s]
Extracting : libcxx-10.0.0-1.conda:   9%|▉         | 3/34 [00:01<00:16,  1.84it/s]                   
Extracting : libcxx-10.0.0-1.conda:  12%|█▏        | 4/34 [00:01<00:15,  1.99it/s]
Extracting : pysocks-1.7.1-py38_1.conda:  12%|█▏        | 4/34 [00:01<00:15,  1.99it/s]
Extracting : setuptools-50.3.1-py38hecd8cb5_1.conda:  15%|█▍        | 5/34 [00:01<00:14,  1.99it/s]
Extracting : conda-package-handling-1.7.2-py38h22f3db7_0.conda:  18%|█▊        | 6/34 [00:01<00:14,  1.99it/s]
Extracting : openssl-1.1.1h-haf1e3a3_0.conda:  21%|██        | 7/34 [00:01<00:13,  1.99it/s]                  
Extracting : urllib3-1.25.11-py_0.conda:  24%|██▎       | 8/34 [00:01<00:13,  1.99it/s]     
Extracting : ca-certificates-2020.10.14-0.conda:  26%|██▋       | 9/34 [00:01<00:12,  1.99it/s]
Extracting : six-1.15.0-py38hecd8cb5_0.conda:  29%|██▉       | 10/34 [00:01<00:12,  1.99it/s]  
Extracting : zlib-1.2.11-h1de35cc_3.conda:  32%|███▏      | 11/34 [00:01<00:11,  1.99it/s]   
Extracting : pycosat-0.6.3-py38h1de35cc_1.conda:  35%|███▌      | 12/34 [00:01<00:11,  1.99it/s]
Extracting : conda-4.9.2-py38hecd8cb5_0.conda:  38%|███▊      | 13/34 [00:02<00:10,  1.99it/s]  
Extracting : conda-4.9.2-py38hecd8cb5_0.conda:  41%|████      | 14/34 [00:02<00:07,  2.61it/s]
Extracting : libedit-3.1.20191231-h1de35cc_1.conda:  41%|████      | 14/34 [00:02<00:07,  2.61it/s]
Extracting : readline-8.0-h1de35cc_0.conda:  44%|████▍     | 15/34 [00:02<00:07,  2.61it/s]        
Extracting : cryptography-3.2.1-py38hbcfaee0_1.conda:  47%|████▋     | 16/34 [00:02<00:06,  2.61it/s]
Extracting : sqlite-3.33.0-hffcf06c_0.conda:  50%|█████     | 17/34 [00:02<00:06,  2.61it/s]         
Extracting : requests-2.24.0-py_0.conda:  53%|█████▎    | 18/34 [00:02<00:06,  2.61it/s]    
Extracting : brotlipy-0.7.0-py38h9ed2024_1003.conda:  56%|█████▌    | 19/34 [00:02<00:05,  2.61it/s]
Extracting : pyopenssl-19.1.0-pyhd3eb1b0_1.conda:  59%|█████▉    | 20/34 [00:02<00:05,  2.61it/s]   
Extracting : pycparser-2.20-py_2.conda:  62%|██████▏   | 21/34 [00:02<00:04,  2.61it/s]          
Extracting : cffi-1.14.3-py38h2125817_2.conda:  65%|██████▍   | 22/34 [00:02<00:04,  2.61it/s]
Extracting : python.app-2-py38_10.conda:  68%|██████▊   | 23/34 [00:02<00:04,  2.61it/s]      
Extracting : pip-20.2.4-py38hecd8cb5_0.conda:  71%|███████   | 24/34 [00:02<00:03,  2.61it/s]
Extracting : certifi-2020.6.20-pyhd3eb1b0_3.conda:  74%|███████▎  | 25/34 [00:02<00:03,  2.61it/s]
Extracting : tk-8.6.10-hb0a8c7a_0.conda:  76%|███████▋  | 26/34 [00:02<00:03,  2.61it/s]          
Extracting : wheel-0.35.1-pyhd3eb1b0_0.conda:  79%|███████▉  | 27/34 [00:02<00:02,  2.61it/s]
Extracting : idna-2.10-py_0.conda:  82%|████████▏ | 28/34 [00:02<00:02,  2.61it/s]           
Extracting : tqdm-4.51.0-pyhd3eb1b0_0.conda:  85%|████████▌ | 29/34 [00:02<00:01,  2.61it/s]
Extracting : ncurses-6.2-h0a44026_1.conda:  88%|████████▊ | 30/34 [00:03<00:01,  2.61it/s]  
Extracting : ncurses-6.2-h0a44026_1.conda:  91%|█████████ | 31/34 [00:03<00:00,  3.56it/s]
Extracting : xz-5.2.5-h1de35cc_0.conda:  91%|█████████ | 31/34 [00:03<00:00,  3.56it/s]   
Extracting : python-3.8.5-h26836e1_1.conda:  94%|█████████▍| 32/34 [00:04<00:00,  3.56it/s]
Extracting : python-3.8.5-h26836e1_1.conda:  97%|█████████▋| 33/34 [00:04<00:00,  3.47it/s]
Extracting : yaml-0.2.5-haf1e3a3_0.conda:  97%|█████████▋| 33/34 [00:04<00:00,  3.47it/s]  
                                                                                         
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpK2ITW6/Test

  added / updated specs:
    - brotlipy==0.7.0=py38h9ed2024_1003
    - ca-certificates==2020.10.14=0
    - certifi==2020.6.20=pyhd3eb1b0_3
    - cffi==1.14.3=py38h2125817_2
    - chardet==3.0.4=py38hecd8cb5_1003
    - conda-package-handling==1.7.2=py38h22f3db7_0
    - conda==4.9.2=py38hecd8cb5_0
    - cryptography==3.2.1=py38hbcfaee0_1
    - idna==2.10=py_0
    - libcxx==10.0.0=1
    - libedit==3.1.20191231=h1de35cc_1
    - libffi==3.3=hb1e8313_2
    - ncurses==6.2=h0a44026_1
    - openssl==1.1.1h=haf1e3a3_0
    - pip==20.2.4=py38hecd8cb5_0
    - pycosat==0.6.3=py38h1de35cc_1
    - pycparser==2.20=py_2
    - pyopenssl==19.1.0=pyhd3eb1b0_1
    - pysocks==1.7.1=py38_1
    - python.app==2=py38_10
    - python==3.8.5=h26836e1_1
    - readline==8.0=h1de35cc_0
    - requests==2.24.0=py_0
    - ruamel_yaml==0.15.87=py38haf1e3a3_1
    - setuptools==50.3.1=py38hecd8cb5_1
    - six==1.15.0=py38hecd8cb5_0
    - sqlite==3.33.0=hffcf06c_0
    - tk==8.6.10=hb0a8c7a_0
    - tqdm==4.51.0=pyhd3eb1b0_0
    - urllib3==1.25.11=py_0
    - wheel==0.35.1=pyhd3eb1b0_0
    - xz==5.2.5=h1de35cc_0
    - yaml==0.2.5=haf1e3a3_0
    - zlib==1.2.11=h1de35cc_3


The following NEW packages will be INSTALLED:

  brotlipy           pkgs/main/osx-64::brotlipy-0.7.0-py38h9ed2024_1003
  ca-certificates    pkgs/main/osx-64::ca-certificates-2020.10.14-0
  certifi            pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
  cffi               pkgs/main/osx-64::cffi-1.14.3-py38h2125817_2
  chardet            pkgs/main/osx-64::chardet-3.0.4-py38hecd8cb5_1003
  conda              pkgs/main/osx-64::conda-4.9.2-py38hecd8cb5_0
  conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.7.2-py38h22f3db7_0
  cryptography       pkgs/main/osx-64::cryptography-3.2.1-py38hbcfaee0_1
  idna               pkgs/main/noarch::idna-2.10-py_0
  libcxx             pkgs/main/osx-64::libcxx-10.0.0-1
  libedit            pkgs/main/osx-64::libedit-3.1.20191231-h1de35cc_1
  libffi             pkgs/main/osx-64::libffi-3.3-hb1e8313_2
  ncurses            pkgs/main/osx-64::ncurses-6.2-h0a44026_1
  openssl            pkgs/main/osx-64::openssl-1.1.1h-haf1e3a3_0
  pip                pkgs/main/osx-64::pip-20.2.4-py38hecd8cb5_0
  pycosat            pkgs/main/osx-64::pycosat-0.6.3-py38h1de35cc_1
  pycparser          pkgs/main/noarch::pycparser-2.20-py_2
  pyopenssl          pkgs/main/noarch::pyopenssl-19.1.0-pyhd3eb1b0_1
  pysocks            pkgs/main/osx-64::pysocks-1.7.1-py38_1
  python             pkgs/main/osx-64::python-3.8.5-h26836e1_1
  python.app         pkgs/main/osx-64::python.app-2-py38_10
  readline           pkgs/main/osx-64::readline-8.0-h1de35cc_0
  requests           pkgs/main/noarch::requests-2.24.0-py_0
  ruamel_yaml        pkgs/main/osx-64::ruamel_yaml-0.15.87-py38haf1e3a3_1
  setuptools         pkgs/main/osx-64::setuptools-50.3.1-py38hecd8cb5_1
  six                pkgs/main/osx-64::six-1.15.0-py38hecd8cb5_0
  sqlite             pkgs/main/osx-64::sqlite-3.33.0-hffcf06c_0
  tk                 pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
  tqdm               pkgs/main/noarch::tqdm-4.51.0-pyhd3eb1b0_0
  urllib3            pkgs/main/noarch::urllib3-1.25.11-py_0
  wheel              pkgs/main/noarch::wheel-0.35.1-pyhd3eb1b0_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  yaml               pkgs/main/osx-64::yaml-0.2.5-haf1e3a3_0
  zlib               pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3


Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpK2ITW6/Test

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2021.4.13  |       hecd8cb5_1         114 KB
    certifi-2020.12.5          |   py38hecd8cb5_0         141 KB
    cffi-1.14.5                |   py38h2125817_0         218 KB
    chardet-4.0.0              |py38hecd8cb5_1003         195 KB
    conda-4.10.1               |   py38hecd8cb5_1         2.9 MB
    conda-package-handling-1.7.3|   py38h9ed2024_1         1.5 MB
    cryptography-3.4.7         |   py38h2fd3fbb_0         691 KB
    idna-2.10                  |     pyhd3eb1b0_0          52 KB
    openssl-1.1.1k             |       h9ed2024_0         2.2 MB
    pip-21.0.1                 |   py38hecd8cb5_0         1.8 MB
    pyopenssl-20.0.1           |     pyhd3eb1b0_1          49 KB
    readline-8.1               |       h9ed2024_0         333 KB
    requests-2.25.1            |     pyhd3eb1b0_0          52 KB
    ruamel_yaml-0.15.100       |   py38h9ed2024_0         247 KB
    setuptools-52.0.0          |   py38hecd8cb5_0         714 KB
    sqlite-3.35.4              |       hce871da_0         1.1 MB
    tqdm-4.59.0                |     pyhd3eb1b0_1          93 KB
    urllib3-1.26.4             |     pyhd3eb1b0_0         105 KB
    wheel-0.36.2               |     pyhd3eb1b0_0          33 KB
    ------------------------------------------------------------
                                           Total:        12.5 MB

The following packages will be REMOVED:

  libedit-3.1.20191231-h1de35cc_1

The following packages will be UPDATED:

  ca-certificates                              2020.10.14-0 --> 2021.4.13-hecd8cb5_1
  certifi            pkgs/main/noarch::certifi-2020.6.20-p~ --> pkgs/main/osx-64::certifi-2020.12.5-py38hecd8cb5_0
  cffi                                1.14.3-py38h2125817_2 --> 1.14.5-py38h2125817_0
  chardet                           3.0.4-py38hecd8cb5_1003 --> 4.0.0-py38hecd8cb5_1003
  conda                                4.9.2-py38hecd8cb5_0 --> 4.10.1-py38hecd8cb5_1
  conda-package-han~                   1.7.2-py38h22f3db7_0 --> 1.7.3-py38h9ed2024_1
  cryptography                         3.2.1-py38hbcfaee0_1 --> 3.4.7-py38h2fd3fbb_0
  openssl                                 1.1.1h-haf1e3a3_0 --> 1.1.1k-h9ed2024_0
  pip                                 20.2.4-py38hecd8cb5_0 --> 21.0.1-py38hecd8cb5_0
  pyopenssl                             19.1.0-pyhd3eb1b0_1 --> 20.0.1-pyhd3eb1b0_1
  readline                                   8.0-h1de35cc_0 --> 8.1-h9ed2024_0
  requests                                      2.24.0-py_0 --> 2.25.1-pyhd3eb1b0_0
  ruamel_yaml                        0.15.87-py38haf1e3a3_1 --> 0.15.100-py38h9ed2024_0
  setuptools                          50.3.1-py38hecd8cb5_1 --> 52.0.0-py38hecd8cb5_0
  sqlite                                  3.33.0-hffcf06c_0 --> 3.35.4-hce871da_0
  tqdm                                  4.51.0-pyhd3eb1b0_0 --> 4.59.0-pyhd3eb1b0_1
  urllib3                                      1.25.11-py_0 --> 1.26.4-pyhd3eb1b0_0
  wheel                                 0.35.1-pyhd3eb1b0_0 --> 0.36.2-pyhd3eb1b0_0

The following packages will be DOWNGRADED:

  idna                                            2.10-py_0 --> 2.10-pyhd3eb1b0_0



Downloading and Extracting Packages

cffi-1.14.5          | 218 KB    |            |   0% 
cffi-1.14.5          | 218 KB    | ########## | 100% 
cffi-1.14.5          | 218 KB    | ########## | 100% 

ca-certificates-2021 | 114 KB    |            |   0% 
ca-certificates-2021 | 114 KB    | ########## | 100% 

pyopenssl-20.0.1     | 49 KB     |            |   0% 
pyopenssl-20.0.1     | 49 KB     | ########## | 100% 

requests-2.25.1      | 52 KB     |            |   0% 
requests-2.25.1      | 52 KB     | ########## | 100% 
requests-2.25.1      | 52 KB     | ########## | 100% 

tqdm-4.59.0          | 93 KB     |            |   0% 
tqdm-4.59.0          | 93 KB     | ########## | 100% 
tqdm-4.59.0          | 93 KB     | ########## | 100% 

wheel-0.36.2         | 33 KB     |            |   0% 
wheel-0.36.2         | 33 KB     | ########## | 100% 

ruamel_yaml-0.15.100 | 247 KB    |            |   0% 
ruamel_yaml-0.15.100 | 247 KB    | ########## | 100% 
ruamel_yaml-0.15.100 | 247 KB    | ########## | 100% 

sqlite-3.35.4        | 1.1 MB    |            |   0% 
sqlite-3.35.4        | 1.1 MB    | ########## | 100% 
sqlite-3.35.4        | 1.1 MB    | ########## | 100% 

pip-21.0.1           | 1.8 MB    |            |   0% 
pip-21.0.1           | 1.8 MB    | ########## | 100% 
pip-21.0.1           | 1.8 MB    | ########## | 100% 

conda-4.10.1         | 2.9 MB    |            |   0% 
conda-4.10.1         | 2.9 MB    | ########## | 100% 
conda-4.10.1         | 2.9 MB    | ########## | 100% 

openssl-1.1.1k       | 2.2 MB    |            |   0% 
openssl-1.1.1k       | 2.2 MB    | ########## | 100% 
openssl-1.1.1k       | 2.2 MB    | ########## | 100% 

conda-package-handli | 1.5 MB    |            |   0% 
conda-package-handli | 1.5 MB    | ########## | 100% 
conda-package-handli | 1.5 MB    | ########## | 100% 

certifi-2020.12.5    | 141 KB    |            |   0% 
certifi-2020.12.5    | 141 KB    | ########## | 100% 

cryptography-3.4.7   | 691 KB    |            |   0% 
cryptography-3.4.7   | 691 KB    | ########## | 100% 
cryptography-3.4.7   | 691 KB    | ########## | 100% 

chardet-4.0.0        | 195 KB    |            |   0% 
chardet-4.0.0        | 195 KB    | ########## | 100% 
chardet-4.0.0        | 195 KB    | ########## | 100% 

idna-2.10            | 52 KB     |            |   0% 
idna-2.10            | 52 KB     | ########## | 100% 

urllib3-1.26.4       | 105 KB    |            |   0% 
urllib3-1.26.4       | 105 KB    | ########## | 100% 
urllib3-1.26.4       | 105 KB    | ########## | 100% 

readline-8.1         | 333 KB    |            |   0% 
readline-8.1         | 333 KB    | ########## | 100% 
readline-8.1         | 333 KB    | ########## | 100% 

setuptools-52.0.0    | 714 KB    |            |   0% 
setuptools-52.0.0    | 714 KB    | ########## | 100% 
setuptools-52.0.0    | 714 KB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpK2ITW6/Test/envs/r-reticulate

  added / updated specs:
    - numpy
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2020.12.5  |       h033912b_0         138 KB  conda-forge
    certifi-2020.12.5          |   py36h79c6626_1         143 KB  conda-forge
    libblas-3.9.0              |       9_openblas          11 KB  conda-forge
    libcblas-3.9.0             |       9_openblas          11 KB  conda-forge
    libcxx-11.1.0              |       habf9029_0         1.0 MB  conda-forge
    libffi-3.3                 |       h046ec9c_2          45 KB  conda-forge
    libgfortran-5.0.0          |9_3_0_h6c81a4c_22          19 KB  conda-forge
    libgfortran5-9.3.0         |      h6c81a4c_22         1.7 MB  conda-forge
    liblapack-3.9.0            |       9_openblas          11 KB  conda-forge
    libopenblas-0.3.15         |openmp_h5e1b9a4_0         8.7 MB  conda-forge
    llvm-openmp-11.1.0         |       hda6cdc1_1         268 KB  conda-forge
    ncurses-6.2                |       h2e338ed_4         881 KB  conda-forge
    numpy-1.19.5               |   py36h08dc641_1         5.0 MB  conda-forge
    openssl-1.1.1k             |       h0d85af4_0         1.9 MB  conda-forge
    pip-21.1.1                 |     pyhd8ed1ab_0         1.1 MB  conda-forge
    python-3.6.13              |h7728216_0_cpython        20.6 MB  conda-forge
    python_abi-3.6             |          1_cp36m           4 KB  conda-forge
    readline-8.1               |       h05e3726_0         266 KB  conda-forge
    setuptools-49.6.0          |   py36h79c6626_3         916 KB  conda-forge
    sqlite-3.35.5              |       h44b9ce1_0         1.7 MB  conda-forge
    tk-8.6.10                  |       h0419947_1         3.3 MB  conda-forge
    wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
    xz-5.2.5                   |       haf1e3a3_1         228 KB  conda-forge
    zlib-1.2.11                |    h7795811_1010         102 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        48.0 MB

The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.12.5-h033912b_0
  certifi            conda-forge/osx-64::certifi-2020.12.5-py36h79c6626_1
  libblas            conda-forge/osx-64::libblas-3.9.0-9_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-9_openblas
  libcxx             conda-forge/osx-64::libcxx-11.1.0-habf9029_0
  libffi             conda-forge/osx-64::libffi-3.3-h046ec9c_2
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
  libgfortran5       conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
  liblapack          conda-forge/osx-64::liblapack-3.9.0-9_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.15-openmp_h5e1b9a4_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
  ncurses            conda-forge/osx-64::ncurses-6.2-h2e338ed_4
  numpy              conda-forge/osx-64::numpy-1.19.5-py36h08dc641_1
  openssl            conda-forge/osx-64::openssl-1.1.1k-h0d85af4_0
  pip                conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.6.13-h7728216_0_cpython
  python_abi         conda-forge/osx-64::python_abi-3.6-1_cp36m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py36h79c6626_3
  sqlite             conda-forge/osx-64::sqlite-3.35.5-h44b9ce1_0
  tk                 conda-forge/osx-64::tk-8.6.10-h0419947_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h7795811_1010



Downloading and Extracting Packages

tk-8.6.10            | 3.3 MB    |            |   0% 
tk-8.6.10            | 3.3 MB    | #######7   |  77% 
tk-8.6.10            | 3.3 MB    | ########## | 100% 

wheel-0.36.2         | 31 KB     |            |   0% 
wheel-0.36.2         | 31 KB     | ########## | 100% 

libcblas-3.9.0       | 11 KB     |            |   0% 
libcblas-3.9.0       | 11 KB     | ########## | 100% 

libgfortran5-9.3.0   | 1.7 MB    |            |   0% 
libgfortran5-9.3.0   | 1.7 MB    | ########## | 100% 
libgfortran5-9.3.0   | 1.7 MB    | ########## | 100% 

xz-5.2.5             | 228 KB    |            |   0% 
xz-5.2.5             | 228 KB    | ########## | 100% 
xz-5.2.5             | 228 KB    | ########## | 100% 

libblas-3.9.0        | 11 KB     |            |   0% 
libblas-3.9.0        | 11 KB     | ########## | 100% 

zlib-1.2.11          | 102 KB    |            |   0% 
zlib-1.2.11          | 102 KB    | ########## | 100% 

libgfortran-5.0.0    | 19 KB     |            |   0% 
libgfortran-5.0.0    | 19 KB     | ########## | 100% 

readline-8.1         | 266 KB    |            |   0% 
readline-8.1         | 266 KB    | ########## | 100% 
readline-8.1         | 266 KB    | ########## | 100% 

python_abi-3.6       | 4 KB      |            |   0% 
python_abi-3.6       | 4 KB      | ########## | 100% 

sqlite-3.35.5        | 1.7 MB    |            |   0% 
sqlite-3.35.5        | 1.7 MB    | ########## | 100% 
sqlite-3.35.5        | 1.7 MB    | ########## | 100% 

ca-certificates-2020 | 138 KB    |            |   0% 
ca-certificates-2020 | 138 KB    | ########## | 100% 

python-3.6.13        | 20.6 MB   |            |   0% 
python-3.6.13        | 20.6 MB   | ##5        |  25% 
python-3.6.13        | 20.6 MB   | #####5     |  56% 
python-3.6.13        | 20.6 MB   | ########8  |  88% 
python-3.6.13        | 20.6 MB   | ########## | 100% 

certifi-2020.12.5    | 143 KB    |            |   0% 
certifi-2020.12.5    | 143 KB    | ########## | 100% 

libcxx-11.1.0        | 1.0 MB    |            |   0% 
libcxx-11.1.0        | 1.0 MB    | ########## | 100% 
libcxx-11.1.0        | 1.0 MB    | ########## | 100% 

openssl-1.1.1k       | 1.9 MB    |            |   0% 
openssl-1.1.1k       | 1.9 MB    | ########## | 100% 
openssl-1.1.1k       | 1.9 MB    | ########## | 100% 

setuptools-49.6.0    | 916 KB    |            |   0% 
setuptools-49.6.0    | 916 KB    | ########## | 100% 
setuptools-49.6.0    | 916 KB    | ########## | 100% 

ncurses-6.2          | 881 KB    |            |   0% 
ncurses-6.2          | 881 KB    | ########## | 100% 
ncurses-6.2          | 881 KB    | ########## | 100% 

liblapack-3.9.0      | 11 KB     |            |   0% 
liblapack-3.9.0      | 11 KB     | ########## | 100% 

libopenblas-0.3.15   | 8.7 MB    |            |   0% 
libopenblas-0.3.15   | 8.7 MB    | #####      |  50% 
libopenblas-0.3.15   | 8.7 MB    | ########## | 100% 
libopenblas-0.3.15   | 8.7 MB    | ########## | 100% 

pip-21.1.1           | 1.1 MB    |            |   0% 
pip-21.1.1           | 1.1 MB    | ########## | 100% 
pip-21.1.1           | 1.1 MB    | ########## | 100% 

llvm-openmp-11.1.0   | 268 KB    |            |   0% 
llvm-openmp-11.1.0   | 268 KB    | ########## | 100% 

libffi-3.3           | 45 KB     |            |   0% 
libffi-3.3           | 45 KB     | ########## | 100% 

numpy-1.19.5         | 5.0 MB    |            |   0% 
numpy-1.19.5         | 5.0 MB    | #########8 |  99% 
numpy-1.19.5         | 5.0 MB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
#     $ conda deactivate

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
170.325  58.388 213.415

Example timings

Herper.Rcheck/Herper-Ex.timings

nameusersystemelapsed
ListCondaEnvironments183.402 48.425229.532
ListCondaPackages11.272 1.33212.633
SaveEnvironments34.65214.12552.943
UseEnvironments193.899 14.260213.864
install_CondaSysReqs117.496 13.492132.797
install_CondaTools28.47517.60247.927
search_conda8.5661.1039.894