David duVerle
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/cellTree |
| Branch: RELEASE_3_12 |
| Last Commit: 666febd |
| Last Changed Date: 2020-10-27 11:10:29 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:10 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the cellTree package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 260/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cellTree 1.20.0 (landing page) David duVerle
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | TIMEOUT | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cellTree |
| Version: 1.20.0 |
| Command: rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.20.0.tar.gz |
| StartedAt: 2021-05-06 08:39:35 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:40:05 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 29.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: cellTree_1.20.0.zip |
| PackageFileSize: 1005 KiB |
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### Running command:
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### rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.20.0.tar.gz
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install for i386
* installing *source* package 'cellTree' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
converting help for package 'cellTree'
finding HTML links ... done
HSMM_lda_model html
cell.ordering.table html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/cell.ordering.table.Rd:10: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
cellTree-package html
compute.backbone.tree html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.backbone.tree.Rd:34: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
compute.go.enrichment html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.go.enrichment.Rd:30: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
compute.lda html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.lda.Rd:25: file link 'LDA-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.lda.Rd:69: file link 'LDA' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.lda.Rd:69: file link 'LDA_Gibbscontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/compute.lda.Rd:69: file link 'CTM_VEMcontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
ct.plot.go.dag html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/ct.plot.go.dag.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
ct.plot.grouping html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/ct.plot.grouping.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/ct.plot.grouping.Rd:31: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
ct.plot.heatmap html
ct.plot.topics html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/ct.plot.topics.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpAn4FIz/R.INSTALL45a84fea487d/cellTree/man/ct.plot.topics.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
get.cell.dists html
go.results.to.latex html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cellTree' ...
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'cellTree' as cellTree_1.20.0.zip
* DONE (cellTree)