Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:38 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the cyanoFilter package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 427/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.0.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: cyanoFilter |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings cyanoFilter_1.0.0.tar.gz |
StartedAt: 2021-10-14 09:27:28 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:28:48 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 79.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings cyanoFilter_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 2.526 | 0.116 | 2.644 | |
PhytoFilter | 0.916 | 0.032 | 0.948 | |
PhytopFilter | 0.504 | 0.024 | 0.529 | |
cellmargin | 0.258 | 0.008 | 0.266 | |
clusterExtract | 0.701 | 0.012 | 0.712 | |
clusterExtractp | 1.040 | 0.012 | 1.051 | |
debrisNc | 0.330 | 0.036 | 0.367 | |
fullFlowframe-MarginEvents-method | 0.257 | 0.000 | 0.257 | |
fullFlowframe-PhytopFilter-method | 0.552 | 0.012 | 0.564 | |
ggpairsDens | 2.299 | 0.024 | 2.322 | |
ggplotDens | 0.479 | 0.012 | 0.492 | |
ggplotDens2 | 0.701 | 0.024 | 0.725 | |
goodfcs | 0.018 | 0.003 | 0.022 | |
is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
is.MarginEvents | 0.001 | 0.000 | 0.001 | |
is.PhytopFilter | 0 | 0 | 0 | |
lnTrans | 0.171 | 0.004 | 0.175 | |
newFlowframe | 0.214 | 0.044 | 0.258 | |
nona | 0.087 | 0.000 | 0.087 | |
noneg | 0.137 | 0.008 | 0.145 | |
oneDgate | 0.181 | 0.060 | 0.241 | |
pairsPlot | 2.240 | 0.024 | 2.264 | |
pigmentGate | 0.231 | 0.052 | 0.283 | |
reducedFlowframe-MarginEvents-method | 0.245 | 0.008 | 0.253 | |
reducedFlowframe | 0.243 | 0.008 | 0.251 | |
retain | 0.027 | 0.000 | 0.027 | |
rowNumbers | 0.183 | 0.060 | 0.243 | |
summaries-DebrisFilter-method | 0.249 | 0.010 | 0.259 | |
summaries-MarginEvents-method | 0.244 | 0.013 | 0.259 | |
summaries-PhytopFilter-method | 0.666 | 0.004 | 0.670 | |
summaries | 0.276 | 0.012 | 0.288 | |