| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the infercnv package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/infercnv.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 920/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| infercnv 1.8.1 (landing page) Christophe Georgescu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: infercnv |
| Version: 1.8.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/infercnv_1.8.1.tar.gz && rm -rf infercnv.buildbin-libdir && mkdir infercnv.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infercnv.buildbin-libdir infercnv_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL infercnv_1.8.1.zip && rm infercnv_1.8.1.tar.gz infercnv_1.8.1.zip |
| StartedAt: 2021-10-14 09:29:15 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:30:52 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 97.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/infercnv_1.8.1.tar.gz && rm -rf infercnv.buildbin-libdir && mkdir infercnv.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infercnv.buildbin-libdir infercnv_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL infercnv_1.8.1.zip && rm infercnv_1.8.1.tar.gz infercnv_1.8.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
11 3766k 11 421k 0 0 602k 0 0:00:06 --:--:-- 0:00:06 602k
55 3766k 55 2092k 0 0 1260k 0 0:00:02 0:00:01 0:00:01 1260k
100 3766k 100 3766k 0 0 1617k 0 0:00:02 0:00:02 --:--:-- 1617k
install for i386
* installing *source* package 'infercnv' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'infercnv'
finding HTML links ... done
CreateInfercnvObject html
HMM_states html
MCMC_inferCNV-class html
add_to_seurat html
apply_median_filtering html
color.palette html
filterHighPNormals html
inferCNVBayesNet html
infercnv-class html
infercnv-package html
infercnv_annots_example html
infercnv_data_example html
infercnv_genes_example html
infercnv_object_example html
mcmc_obj html
plot_cnv html
plot_per_group html
run html
sample_object html
validate_infercnv_obj html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'infercnv' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'infercnv' as infercnv_1.8.1.zip
* DONE (infercnv)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'infercnv' successfully unpacked and MD5 sums checked