Lanyu Zhang
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/rnaEditr |
| git_branch: RELEASE_3_13 |
| git_last_commit: 377f691 |
| git_last_commit_date: 2021-05-19 12:56:26 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:51 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the rnaEditr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rnaEditr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1600/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rnaEditr 1.2.0 (landing page) Lanyu Zhang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rnaEditr |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:rnaEditr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings rnaEditr_1.2.0.tar.gz |
| StartedAt: 2021-10-14 11:21:59 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:25:48 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 228.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rnaEditr.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:rnaEditr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings rnaEditr_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/rnaEditr.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rnaEditr/DESCRIPTION’ ... OK * this is package ‘rnaEditr’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rnaEditr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
rnaEditr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL rnaEditr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘rnaEditr’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rnaEditr)
rnaEditr.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rnaEditr)
>
> test_check("rnaEditr")
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[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
>
> proc.time()
user system elapsed
17.527 0.694 18.213
rnaEditr.Rcheck/rnaEditr-Ex.timings
| name | user | system | elapsed | |
| AddMetaData | 1.342 | 0.048 | 1.391 | |
| AllCloseByRegions | 0.447 | 0.036 | 0.483 | |
| AllCoeditedRegions | 0.585 | 0.039 | 0.625 | |
| AnnotateResults | 2.536 | 0.040 | 2.576 | |
| CountSamplesPerGroup | 0.003 | 0.000 | 0.002 | |
| CreateEditingTable | 0.036 | 0.000 | 0.035 | |
| CreateOutputDF | 0.019 | 0.000 | 0.018 | |
| CreateRdrop | 0.011 | 0.000 | 0.011 | |
| FindCorrelatedRegions | 0.014 | 0.000 | 0.013 | |
| GetMinPairwiseCor | 0.003 | 0.004 | 0.007 | |
| GetSitesLocations | 0.120 | 0.008 | 0.128 | |
| MakeModelFormula | 0.001 | 0.000 | 0.000 | |
| MarkCoeditedSites | 0.008 | 0.004 | 0.012 | |
| OrderSitesByLocation | 0.002 | 0.000 | 0.001 | |
| PlotEditingCorrelations | 0.642 | 0.004 | 0.646 | |
| RegionSummaryMethod | 0.045 | 0.000 | 0.046 | |
| SingleCloseByRegion | 0.119 | 0.004 | 0.123 | |
| SingleCoeditedRegion | 0.163 | 0.000 | 0.163 | |
| SitesToRegion | 0.036 | 0.000 | 0.036 | |
| SummarizeAllRegions | 1.467 | 0.008 | 1.475 | |
| SummarizeSingleRegion | 0.103 | 0.008 | 0.112 | |
| TestAssociations | 1.485 | 0.012 | 1.496 | |
| TestSingleRegion | 0.042 | 0.000 | 0.042 | |
| TransformToGR | 0.078 | 0.000 | 0.078 | |