Estefania Mancini
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ASpli |
| git_branch: RELEASE_3_14 |
| git_last_commit: 9dad6f1 |
| git_last_commit_date: 2021-10-26 12:29:18 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ASpli package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 90/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ASpli 2.4.0 (landing page) Estefania Mancini
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ASpli |
| Version: 2.4.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ASpli_2.4.0.tar.gz |
| StartedAt: 2022-04-12 15:43:42 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 16:13:13 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 1771.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ASpli_2.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ASpli.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '2.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 116.16 1.03 147.36
splicingReport 62.58 0.00 62.58
integrateSignals 61.97 0.01 61.98
jCounts-methods 61.92 0.02 61.96
jDUreport 59.16 0.01 59.25
exportSplicingReports 57.61 0.27 58.33
exportIntegratedSignals 55.52 0.14 85.37
gbDUreport-method 52.72 0.03 52.84
gbCounts 49.84 0.02 49.86
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 135.31 0.18 135.60
jCounts-methods 72.91 0.00 72.91
jDUreport 72.72 0.00 72.78
integrateSignals 72.50 0.03 72.57
splicingReport 68.84 0.00 68.85
exportIntegratedSignals 68.45 0.27 77.89
exportSplicingReports 66.95 0.12 68.59
gbDUreport-method 61.39 0.05 61.53
gbCounts 58.32 0.00 58.33
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ASpli_2.4.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ASpli_2.4.0.zip && rm ASpli_2.4.0.tar.gz ASpli_2.4.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 4893k 3 183k 0 0 485k 0 0:00:10 --:--:-- 0:00:10 485k
27 4893k 27 1351k 0 0 979k 0 0:00:04 0:00:01 0:00:03 979k
54 4893k 54 2654k 0 0 1114k 0 0:00:04 0:00:02 0:00:02 1114k
93 4893k 93 4579k 0 0 1356k 0 0:00:03 0:00:03 --:--:-- 1356k
100 4893k 100 4893k 0 0 1402k 0 0:00:03 0:00:03 --:--:-- 1402k
install for i386
* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-deprecated html
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
ASpliIntegratedSignals-class html
ASpliJDU-class html
ASpliSplicingReport-class html
DUreport html
finding level-2 HTML links ... done
DUreport.norm html
DUreport.offset html
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_JDU html
acc_MergedReport html
acc_counts html
acc_features html
acc_is html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
exportIntegratedSignals html
exportSplicingReports html
filterDU-method html
filterSignals html
gbCounts html
gbDUreport-method html
getConditions-function html
integrateSignals html
jCounts-methods html
jDUreport html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
show-methods html
splicingReport html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_2.4.0.zip
* DONE (ASpli)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked
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ASpli.Rcheck/examples_i386/ASpli-Ex.timings
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ASpli.Rcheck/examples_x64/ASpli-Ex.timings
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