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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BAGS_2.34.0.tar.gz && rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BAGS.buildbin-libdir BAGS_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BAGS_2.34.0.zip && rm BAGS_2.34.0.tar.gz BAGS_2.34.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 96183 100 96183 0 0 491k 0 --:--:-- --:--:-- --:--:-- 494k
install for i386
* installing *source* package 'BAGS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
^~~~
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^~~~~~~~~
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
^~~~~~~
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
^~~~~~~
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
^~~~~~~
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResSgmA1,ResSgmA;
^~~~~~~
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BAGS'
finding HTML links ... done
AnnotationMFGO html
BAGS-internal html
BAGS-package html
DataGeneSets html
Gibbs2 html
Gibbs3 html
Gibbs4 html
Gibbs5 html
MCMCDataSet html
ReadGMT html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BAGS' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
^~~~
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^~~~~~~~~
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^~~~~~~
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
^~~~~~~
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
^~~~~~~
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
^~~~~~~
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^~~~~~~
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^~~~~~~~
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
double ResRho1,ResSgmA1,ResSgmA;
^~~~~~~
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BAGS.buildbin-libdir/BAGS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BAGS' as BAGS_2.34.0.zip
* DONE (BAGS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BAGS' successfully unpacked and MD5 sums checked
