Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:13 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BioCor on tokay2


To the developers/maintainers of the BioCor package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioCor.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 164/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioCor 1.18.0  (landing page)
Lluís Revilla Sancho
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BioCor
git_branch: RELEASE_3_14
git_last_commit: 867e619
git_last_commit_date: 2021-10-26 12:33:55 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BioCor
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioCor_1.18.0.tar.gz && rm -rf BioCor.buildbin-libdir && mkdir BioCor.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioCor.buildbin-libdir BioCor_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioCor_1.18.0.zip && rm BioCor_1.18.0.tar.gz BioCor_1.18.0.zip
StartedAt: 2022-04-12 05:58:51 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:59:56 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 64.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioCor_1.18.0.tar.gz && rm -rf BioCor.buildbin-libdir && mkdir BioCor.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioCor.buildbin-libdir BioCor_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioCor_1.18.0.zip && rm BioCor_1.18.0.tar.gz BioCor_1.18.0.zip
###
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##############################################################################


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100  109k  100  109k    0     0   572k      0 --:--:-- --:--:-- --:--:--  574k

install for i386

* installing *source* package 'BioCor' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Creating a generic function from function 'clusterGeneSim' in package 'BioCor'
Creating a generic function from function 'clusterSim' in package 'BioCor'
Creating a generic function from function 'geneSim' in package 'BioCor'
Creating a generic function from function 'mclusterGeneSim' in package 'BioCor'
Creating a generic function from function 'mclusterSim' in package 'BioCor'
Creating a generic function from function 'mgeneSim' in package 'BioCor'
Creating a generic function from function 'mpathSim' in package 'BioCor'
Creating a generic function from function 'pathSim' in package 'BioCor'
** help
*** installing help indices
  converting help for package 'BioCor'
    finding HTML links ... done
    AintoB                                  html  
    BioCor-package                          html  
    addSimilarities                         html  
    clusterGeneSim                          html  
    clusterSim                              html  
    combinadic                              html  
    combineScores                           html  
    combineSources                          html  
    conversions                             html  
    diceSim                                 html  
    duplicateIndices                        html  
    geneSim                                 html  
    incidence-list-method                   html  
    inverseList                             html  
    mclusterGeneSim                         html  
    mclusterSim                             html  
    mgeneSim                                html  
    mpathSim                                html  
    pathSim                                 html  
    removeDup                               html  
    seq2mat                                 html  
    similarities                            html  
    weighted                                html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BioCor' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioCor' as BioCor_1.18.0.zip
* DONE (BioCor)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BioCor' successfully unpacked and MD5 sums checked