| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:15 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BioNERO package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioNERO.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 187/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BioNERO 1.2.0 (landing page) Fabricio Almeida-Silva
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BioNERO |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioNERO_1.2.0.tar.gz && rm -rf BioNERO.buildbin-libdir && mkdir BioNERO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioNERO.buildbin-libdir BioNERO_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioNERO_1.2.0.zip && rm BioNERO_1.2.0.tar.gz BioNERO_1.2.0.zip |
| StartedAt: 2022-04-12 07:24:46 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:26:22 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 95.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioNERO_1.2.0.tar.gz && rm -rf BioNERO.buildbin-libdir && mkdir BioNERO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioNERO.buildbin-libdir BioNERO_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioNERO_1.2.0.zip && rm BioNERO_1.2.0.tar.gz BioNERO_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
26 2496k 26 659k 0 0 1443k 0 0:00:01 --:--:-- 0:00:01 1442k
100 2496k 100 2496k 0 0 2227k 0 0:00:01 0:00:01 --:--:-- 2228k
install for i386
* installing *source* package 'BioNERO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BioNERO'
finding HTML links ... done
PC_correction html
SFT_fit html
ZKfiltering html
check_SFT html
consensus_SFT_fit html
consensus_modules html
consensus_trait_cor html
cormat_to_edgelist html
detect_communities html
dfs2one html
enrichment_analysis html
exp2gcn html
exp2grn html
exp_genes2orthogroups html
exp_preprocess html
filt.se html
filter_by_variance html
gene_significance html
get_HK html
get_edge_list html
get_hubs_gcn html
get_hubs_grn html
get_neighbors html
grn_average_rank html
grn_combined html
grn_filter html
grn_infer html
is_singleton html
modPres_WGCNA html
modPres_netrep html
module_enrichment html
module_preservation html
module_stability html
module_trait_cor html
net_stats html
og.zma.osa html
osa.se html
parse_orthofinder html
plot_PCA html
plot_dendro_and_colors html
plot_dendro_and_cons_colors html
plot_eigengene_network html
plot_expression_profile html
plot_gcn html
plot_grn html
plot_heatmap html
plot_ngenes_per_module html
plot_ppi html
q_normalize html
remove_nonexp html
replace_na html
zma.interpro html
zma.se html
zma.tfs html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BioNERO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioNERO' as BioNERO_1.2.0.zip
* DONE (BioNERO)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BioNERO' successfully unpacked and MD5 sums checked