Charles Plessy
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/CAGEr |
| git_branch: RELEASE_3_14 |
| git_last_commit: 9218aa9 |
| git_last_commit_date: 2021-11-16 19:37:08 -0400 (Tue, 16 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:17 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CAGEr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 237/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CAGEr 2.0.2 (landing page) Charles Plessy
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CAGEr |
| Version: 2.0.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CAGEr_2.0.2.tar.gz && rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEr.buildbin-libdir CAGEr_2.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CAGEr_2.0.2.zip && rm CAGEr_2.0.2.tar.gz CAGEr_2.0.2.zip |
| StartedAt: 2022-04-12 06:34:35 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:38:41 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 245.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CAGEr_2.0.2.tar.gz && rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEr.buildbin-libdir CAGEr_2.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CAGEr_2.0.2.zip && rm CAGEr_2.0.2.tar.gz CAGEr_2.0.2.zip
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install for i386
* installing *source* package 'CAGEr' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CAGEr'
finding HTML links ... done
CAGEexp-class html
finding level-2 HTML links ... done
CAGEr-class html
CAGEr-package html
CAGEr_Multicore html
CTSS-class html
CTSSclusteringMethod html
CTSScoordinates html
CTSScumulativesTagClusters html
CTSSnormalizedTpm html
CTSStagCount html
CTSStoGenes html
ConsensusClusters-class html
CustomConsensusClusters html
FANTOM5humanSamples html
FANTOM5mouseSamples html
GeneExpDESeq2 html
GeneExpSE html
QuantileWidthFunctions html
TagClusters-class html
aggregateTagClusters html
annotateCTSS html
bam2CTSS html
byCtss html
clusterAggregateAndSum html
clusterCTSS html
coerceInBSgenome html
consensusClusterConvertors html
consensusClusters-set html
consensusClusters html
consensusClustersDESeq2 html
consensusClustersQuantile html
consensusClustersTpm html
coverage-functions html
cumulativeCTSSdistribution html
distclu-functions html
exampleCAGEexp html
exampleZv9_annot html
exportToTrack html
expressionClasses html
genomeName html
getCTSS html
getExpressionProfiles html
getShiftingPromoters html
hanabi-class html
hanabi html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/hanabi+2Clist-method.html
hanabiPlot html
import.CAGEscanMolecule html
import.CTSS html
import.bam html
import.bam.ctss html
import.bedCTSS html
import.bedScore html
import.bedmolecule html
inputFiles html
inputFilesType html
librarySizes html
loadFileIntoGPos html
mapStats html
mapStatsScopes html
mergeCAGEsets html
mergeSamples html
moleculesGR2CTSS html
normalizeTagCount html
parseCAGEscanBlocksToGrangeTSS html
plot.hanabi html
plotAnnot html
plotCorrelation html
plotExpressionProfiles html
plotInterquantileWidth html
plotReverseCumulatives html
powerLaw html
quantilePositions html
ranges2annot html
ranges2genes html
ranges2names html
sampleLabels html
scoreShift html
seqNameTotalsSE html
setColors html
strandInvaders html
summariseChrExpr html
tagClusters html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CAGEr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEr' as CAGEr_2.0.2.zip
* DONE (CAGEr)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CAGEr' successfully unpacked and MD5 sums checked