Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:17 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CausalR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CausalR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 252/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CausalR 1.26.0 (landing page) Glyn Bradley
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CausalR |
Version: 1.26.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CausalR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CausalR_1.26.0.tar.gz |
StartedAt: 2022-04-12 16:52:57 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 16:54:13 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 76.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CausalR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CausalR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CausalR_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CausalR.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CausalR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CausalR' version '1.26.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CausalR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... NOTE The following directory looks like a leftover from 'knitr': 'figure' Please remove from your package. * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CausalR.Rcheck/00check.log' for details.
CausalR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CausalR_1.26.0.tar.gz && rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CausalR.buildbin-libdir CausalR_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CausalR_1.26.0.zip && rm CausalR_1.26.0.tar.gz CausalR_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 192k 100 192k 0 0 837k 0 --:--:-- --:--:-- --:--:-- 842k install for i386 * installing *source* package 'CausalR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CausalR' finding HTML links ... done AddIDsToVertices html AddWeightsToEdges html AnalyseExperimentalData html AnalysePredictionsList html CalculateEnrichmentPValue html CalculateSignificance html CalculateSignificanceUsingCubicAlgorithm html CalculateSignificanceUsingCubicAlgorithm1b html CalculateSignificanceUsingQuarticAlgorithm html CalculateTotalWeightForAllContingencyTables html CalculateWeightGivenValuesInThreeByThreeContingencyTable html CausalR-package html CheckPossibleValuesAreValid html CheckRowAndColumnSumValuesAreValid html CompareHypothesis html ComputeFinalDistribution html ComputePValueFromDistributionTable html CreateCCG html CreateCG html CreateNetworkFromTable html DetermineInteractionTypeOfPath html FindApproximateValuesThatWillMaximiseDValue html FindIdsOfConnectedNodesInSubgraph html FindMaximumDValue html GetAllPossibleRoundingCombinations html GetApproximateMaximumDValueFromThreeByTwoContingencyTable html GetApproximateMaximumDValueFromTwoByTwoContingencyTable html GetCombinationsOfCorrectandIncorrectPredictions html GetExplainedNodesOfCCG html GetInteractionInformation html GetMatrixOfCausalRelationships html GetMaxDValueForAFamily html GetMaxDValueForAThreeByTwoFamily html GetMaximumDValueFromTwoByTwoContingencyTable html GetNodeID html GetNodeName html GetNumberOfPositiveAndNegativeEntries html GetPathsInSifFormat html GetRegulatedNodes html GetRowAndColumnSumValues html GetScoreForNumbersOfCorrectandIncorrectPredictions html GetScoresForSingleNode html GetScoresWeightsMatrix html GetScoresWeightsMatrixByCubicAlg html GetSetOfDifferentiallyExpressedGenes html GetSetOfSignificantPredictions html GetShortestPathsFromCCG html GetWeightForNumbersOfCorrectandIncorrectPredictions html GetWeightsAboveHypothesisScoreAndTotalWeights html GetWeightsAboveHypothesisScoreForAThreeByTwoTable html GetWeightsFromInteractionInformation html MakePredictions html MakePredictionsFromCCG html MakePredictionsFromCG html OrderHypotheses html PlotGraphWithNodeNames html PopulateTheThreeByThreeContingencyTable html PopulateTwoByTwoContingencyTable html ProcessExperimentalData html RankTheHypotheses html ReadExperimentalData html ReadSifFileToTable html RemoveIDsNotInExperimentalData html ScoreHypothesis html ValidateFormatOfDataTable html ValidateFormatOfTable html WriteAllExplainedNodesToSifFile html WriteExplainedNodesToSifFile html runRankHypothesis html runSCANR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CausalR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CausalR' as CausalR_1.26.0.zip * DONE (CausalR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CausalR' successfully unpacked and MD5 sums checked
CausalR.Rcheck/tests_i386/runTests.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # Make sure that the igraph package has been loaded > > library(igraph) Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > > BiocGenerics:::testPackage("CausalR") [1] "File read complete - read in 3 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 4 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 4 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "The values in the second column do not match what is expected. They should be (+)1, 0 or -1" [1] "The experimental data read in didn't have two columns" Number of Nodes to analyse: 3 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-538393088/corExplainedNodes-file102070486021.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-538393088/corExplainedNodes-file102070486021_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-487920436/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-487920436/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-659421638/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/corExplainedNodes-file102054294ada.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/corExplainedNodes-file102054294ada_anno.txt corExplainedNodes Node0 Activates Node1 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/incorExplainedNodes-file102054294ada.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/incorExplainedNodes-file102054294ada_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/ambExplainedNodes-file102054294ada.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/ambExplainedNodes-file102054294ada_anno.txt ambExplainedNodes Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/corExplainedNodes-file10207a6627d8.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/corExplainedNodes-file10207a6627d8_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/incorExplainedNodes-file10207a6627d8.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/incorExplainedNodes-file10207a6627d8_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/ambExplainedNodes-file10207a6627d8.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB/ambExplainedNodes-file10207a6627d8_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-775852579/corExplainedNodes-file1020604e49b.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-775852579/corExplainedNodes-file1020604e49b_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-401617573/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-401617573/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2dSkxB-597138699/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 RUNIT TEST PROTOCOL -- Tue Apr 12 16:53:54 2022 *********************************************** Number of test functions: 129 Number of errors: 0 Number of failures: 0 1 Test Suite : CausalR RUnit Tests - 129 test functions, 0 errors, 0 failures Number of test functions: 129 Number of errors: 0 Number of failures: 0 Warning messages: 1: In file(file, "rt") : cannot open file 'nonExistentFile.sif': No such file or directory 2: In file(file, "rt") : cannot open file 'nonExistentFile.sif': No such file or directory > > proc.time() user system elapsed 2.39 0.25 10.42 |
CausalR.Rcheck/tests_x64/runTests.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # Make sure that the igraph package has been loaded > > library(igraph) Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > > BiocGenerics:::testPackage("CausalR") [1] "File read complete - read in 3 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 4 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "File read complete - read in 4 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" [1] "The values in the second column do not match what is expected. They should be (+)1, 0 or -1" [1] "The experimental data read in didn't have two columns" Number of Nodes to analyse: 3 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 2 Number of Nodes to analyse: 2 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 1 Number of Nodes to analyse: 1 Parallel processing. Number of cores: 2 Number of Nodes to analyse: 3 Number of Nodes to analyse: 3 Parallel processing. Number of cores: 2 [1] "File read complete - read in 2 lines. Now constructing network" [1] "Network has been created - now adding edge properties" [1] "Added weights to edges" Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-607320521/corExplainedNodes-file2e7835717507.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-607320521/corExplainedNodes-file2e7835717507_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-175880177/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-175880177/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-426597436/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/corExplainedNodes-file2e783f443745.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/corExplainedNodes-file2e783f443745_anno.txt corExplainedNodes Node0 Activates Node1 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/incorExplainedNodes-file2e783f443745.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/incorExplainedNodes-file2e783f443745_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/ambExplainedNodes-file2e783f443745.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/ambExplainedNodes-file2e783f443745_anno.txt ambExplainedNodes Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/corExplainedNodes-file2e78386c5a61.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/corExplainedNodes-file2e78386c5a61_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/incorExplainedNodes-file2e78386c5a61.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/incorExplainedNodes-file2e78386c5a61_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/ambExplainedNodes-file2e78386c5a61.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV/ambExplainedNodes-file2e78386c5a61_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-967265733/corExplainedNodes-file2e7843da7618.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-967265733/corExplainedNodes-file2e7843da7618_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-288072752/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-288072752/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/corExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/corExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt corExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Activates Node3 Node2 Activates Node6 Node2 Activates Node7 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/incorExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt incorExplainedNodes Node0 Inhibits Node2 Writing sif file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+.sif Writing annotation file to: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp2f91sV-181729527/ambExplainedNodes-testNetwork1-testData1-delta2-Node0+_anno.txt ambExplainedNodes Node0 Activates Node1 Node0 Inhibits Node2 Node1 Inhibits Node5 Node2 Inhibits Node5 RUNIT TEST PROTOCOL -- Tue Apr 12 16:54:05 2022 *********************************************** Number of test functions: 129 Number of errors: 0 Number of failures: 0 1 Test Suite : CausalR RUnit Tests - 129 test functions, 0 errors, 0 failures Number of test functions: 129 Number of errors: 0 Number of failures: 0 Warning messages: 1: In file(file, "rt") : cannot open file 'nonExistentFile.sif': No such file or directory 2: In file(file, "rt") : cannot open file 'nonExistentFile.sif': No such file or directory > > proc.time() user system elapsed 2.56 0.28 9.98 |
CausalR.Rcheck/examples_i386/CausalR-Ex.timings
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CausalR.Rcheck/examples_x64/CausalR-Ex.timings
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