Thomas Girke
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ChemmineOB |
| git_branch: RELEASE_3_14 |
| git_last_commit: 01c4d21 |
| git_last_commit_date: 2021-10-26 12:09:34 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:19 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ChemmineOB package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineOB.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 292/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChemmineOB 1.32.0 (landing page) Thomas Girke
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: ChemmineOB |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ChemmineOB_1.32.0.tar.gz && rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChemmineOB.buildbin-libdir ChemmineOB_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.32.0.zip && rm ChemmineOB_1.32.0.tar.gz ChemmineOB_1.32.0.zip |
| StartedAt: 2022-04-12 04:22:41 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:33:21 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 640.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ChemmineOB_1.32.0.tar.gz && rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChemmineOB.buildbin-libdir ChemmineOB_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.32.0.zip && rm ChemmineOB_1.32.0.tar.gz ChemmineOB_1.32.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 1065k 4 47037 0 0 297k 0 0:00:03 --:--:-- 0:00:03 298k
100 1065k 100 1065k 0 0 952k 0 0:00:01 0:00:01 --:--:-- 952k
install for i386
* installing *source* package 'ChemmineOB' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -IC:/openbabel3/src/i386/include -IC:/openbabel3/deps/eigin-3.3.7 -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'void _p_f_enum_std__ios_base__event_r_std__ios_base_int__void(std::ios_base::event, std::ios_base&, int)':
ChemmineOB.cpp:4160:7: warning: unused variable 'ecode' [-Wunused-variable]
int ecode = 0; arg1 = (std::ios_base::event) swigarg_arg1; arg2 = (std::ios_base *) &swigarg_arg2; arg3 = (int) swigarg_arg3;
^~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -IC:/openbabel3/src/i386/include -IC:/openbabel3/deps/eigin-3.3.7 -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c canonical.cpp -o canonical.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel3/bin/i386/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ChemmineOB.buildbin-libdir/00LOCK-ChemmineOB/00new/ChemmineOB/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'copyToR' with signature '"_p_std::char_traits<(char)>"': no definition for class "_p_std::char_traits<(char)>"
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::OBStereo"': no definition for class "_p_OpenBabel::OBStereo"
in method for 'copyToR' with signature '"_p_OpenBabel::OBStereoUnit"': no definition for class "_p_OpenBabel::OBStereoUnit"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
in method for 'copyToR' with signature '"_p_OpenBabel::OBTetrahedralConfig"': no definition for class "_p_OpenBabel::OBTetrahedralConfig"
in method for 'copyToR' with signature '"_p_OpenBabel::OBCisTransConfig"': no definition for class "_p_OpenBabel::OBCisTransConfig"
in method for 'copyToR' with signature '"_p_OpenBabel::OBSquarePlanarConfig"': no definition for class "_p_OpenBabel::OBSquarePlanarConfig"
** help
*** installing help indices
converting help for package 'ChemmineOB'
finding HTML links ... done
OB-classes html
REDIRECT:topic $,_p_std__vectorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_std__allocatorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_t_t-method -> OB-classes.html [ FAIL ]
REDIRECT:topic $,_p_std__vectorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_std__allocatorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_t_t-method -> OB-classes.html [ FAIL ]
canonicalNumbering_OB html
convertFormat html
convertFormatFile html
convertToImage html
exactMass_OB html
fingerprint_OB html
forEachMol html
prop_OB html
smartsSearch_OB html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
ChemmineOB is not fully supported on this platform. windows i386
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
ChemmineOB is not fully supported on this platform. windows i386
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -IC:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigin-3.3.7 -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'void _p_f_enum_std__ios_base__event_r_std__ios_base_int__void(std::ios_base::event, std::ios_base&, int)':
ChemmineOB.cpp:4160:7: warning: unused variable 'ecode' [-Wunused-variable]
int ecode = 0; arg1 = (std::ios_base::event) swigarg_arg1; arg2 = (std::ios_base *) &swigarg_arg2; arg3 = (int) swigarg_arg3;
^~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -IC:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigin-3.3.7 -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c canonical.cpp -o canonical.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel3/bin/x64/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChemmineOB' as ChemmineOB_1.32.0.zip
* DONE (ChemmineOB)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ChemmineOB' successfully unpacked and MD5 sums checked