| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:23 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CopyNumberPlots package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CopyNumberPlots.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 396/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CopyNumberPlots 1.10.0 (landing page) Bernat Gel
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CopyNumberPlots |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CopyNumberPlots_1.10.0.tar.gz && rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots_1.10.0.zip && rm CopyNumberPlots_1.10.0.tar.gz CopyNumberPlots_1.10.0.zip |
| StartedAt: 2022-04-12 07:14:03 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:15:55 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 111.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CopyNumberPlots_1.10.0.tar.gz && rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots_1.10.0.zip && rm CopyNumberPlots_1.10.0.tar.gz CopyNumberPlots_1.10.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 188k 100 188k 0 0 345k 0 --:--:-- --:--:-- --:--:-- 345k
100 188k 100 188k 0 0 345k 0 --:--:-- --:--:-- --:--:-- 345k
install for i386
* installing *source* package 'CopyNumberPlots' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CopyNumberPlots'
finding HTML links ... done
EnsemblStyle html
UCSCStyle html
Ztree2Hclust html
colByCopyNumber html
computeHclustPlotOrder html
getBAFColumn html
getChrColumn html
getColumn html
getCopyNumberColors html
getCopyNumberColumn html
getEndColumn html
getIDColumn html
getLOHColumn html
getLRRColumn html
getPosColumn html
getSegmentValueColumn html
getStartColumn html
loadCopyNumberCalls html
loadCopyNumberCallsCNVkit html
loadCopyNumberCallsCnmops html
loadCopyNumberCallsDECoN html
loadCopyNumberCallsDNAcopy html
loadCopyNumberCallsPanelcnmops html
loadCopyNumberCallsSeg html
loadCopyNumberCallspennCNV html
loadSNPData html
loadSNPDataDNAcopy html
loadSNPDataFromVCF html
plotBAF html
finding level-2 HTML links ... done
plotCopyNumberCalls html
plotCopyNumberCallsAsLines html
plotCopyNumberSummary html
plotLRR html
plotSingleCellCopyNumberCalls html
plotSingleCellCopyNumberSummary html
prepareLabels html
readHDF5Ztree html
removeNAs html
transformChr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CopyNumberPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CopyNumberPlots' as CopyNumberPlots_1.10.0.zip
* DONE (CopyNumberPlots)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CopyNumberPlots' successfully unpacked and MD5 sums checked