Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:23 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CountClust package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CountClust.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 408/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CountClust 1.22.0 (landing page) Kushal Dey
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: CountClust |
Version: 1.22.0 |
Command: chmod a+r CountClust -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust |
StartedAt: 2022-04-12 09:14:30 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 09:15:23 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 52.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CountClust -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust ### ############################################################################## ############################################################################## * checking for file 'CountClust/DESCRIPTION' ... OK * preparing 'CountClust': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'count-clust.Rmd' using rmarkdown Loading required package: usethis Downloading GitHub repo TaddyLab/maptpx@HEAD Installing package into 'C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmpkb3B6A/Rinstdeccc77e3d' (as 'lib' is unspecified) * installing *source* package 'maptpx' ... ** using staged installation ** libs *** arch - i386 "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c latools.c -o latools.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rhelp.c -o rhelp.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c topics.c -o topics.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maptpx.dll tmp.def init.o latools.o rhelp.o topics.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmpkb3B6A/Rinstdeccc77e3d/00LOCK-maptpx/00new/maptpx/libs/i386 *** arch - x64 "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c latools.c -o latools.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rhelp.c -o rhelp.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c topics.c -o topics.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maptpx.dll tmp.def init.o latools.o rhelp.o topics.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmpkb3B6A/Rinstdeccc77e3d/00LOCK-maptpx/00new/maptpx/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maptpx' finding HTML links ... done counts html predict.topics html rdir html topicVar html topics html ** building package indices ** testing if installed package can be loaded from temporary location *** arch - i386 *** arch - x64 ** testing if installed package can be loaded from final location *** arch - i386 *** arch - x64 ** testing if installed package keeps a record of temporary installation path * DONE (maptpx) Loading required package: ggplot2 Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", : cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden' Quitting from lines 118-130 (count-clust.Rmd) Error: processing vignette 'count-clust.Rmd' failed with diagnostics: cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda' --- failed re-building 'count-clust.Rmd' SUMMARY: processing the following file failed: 'count-clust.Rmd' Error: Vignette re-building failed. Execution halted