Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:27 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for DiffLogo on tokay2


To the developers/maintainers of the DiffLogo package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DiffLogo.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 508/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DiffLogo 2.18.0  (landing page)
Hendrik Treutler
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/DiffLogo
git_branch: RELEASE_3_14
git_last_commit: 8ac0955
git_last_commit_date: 2021-10-26 12:22:35 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: DiffLogo
Version: 2.18.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DiffLogo_2.18.0.tar.gz && rm -rf DiffLogo.buildbin-libdir && mkdir DiffLogo.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DiffLogo.buildbin-libdir DiffLogo_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DiffLogo_2.18.0.zip && rm DiffLogo_2.18.0.tar.gz DiffLogo_2.18.0.zip
StartedAt: 2022-04-12 04:10:14 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:11:34 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 80.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DiffLogo_2.18.0.tar.gz && rm -rf DiffLogo.buildbin-libdir && mkdir DiffLogo.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DiffLogo.buildbin-libdir DiffLogo_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DiffLogo_2.18.0.zip && rm DiffLogo_2.18.0.tar.gz DiffLogo_2.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  743k  100  743k    0     0   951k      0 --:--:-- --:--:-- --:--:--  953k

install for i386

* installing *source* package 'DiffLogo' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DiffLogo'
    finding HTML links ... done
    ASN                                     html  
    Alphabet                                html  
    DNA                                     html  
    FULL_ALPHABET                           html  
    RNA                                     html  
    alignPwmSets                            html  
    baseDistributionPwm                     html  
    calculatePvalue                         html  
    createDiffLogoObject                    html  
    diffLogo                                html  
    diffLogoFromPwm                         html  
    diffLogoTable                           html  
    diffLogoTableConfiguration              html  
    differenceOfICs                         html  
    drawDiffLogoTable                       html  
    enrichDiffLogoObjectWithPvalues         html  
    enrichDiffLogoTableWithPvalues          html  
    extendPwmsFromAlignmentVector           html  
    getAlphabetFromCharacters               html  
    getAlphabetFromSequences                html  
    getPwmFromAlignment                     html  
    getPwmFromAlignmentFile                 html  
    getPwmFromFastaFile                     html  
    getPwmFromFile                          html  
    getPwmFromHomerFile                     html  
    getPwmFromPfmOrJasparFile               html  
    getPwmFromPwmFile                       html  
    getSequencesFromAlignmentFile           html  
    getSequencesFromFastaFile               html  
    informationContent                      html  
    localPwmAlignment                       html  
    lossOfAbsICDifferences                  html  
    multipleLocalPwmsAlignment              html  
    normalizePWM                            html  
    normalizedDifferenceOfProbabilities     html  
    prepareDiffLogoTable                    html  
    probabilities                           html  
    pwmDivergence                           html  
    pwmsDistanceMatrix                      html  
    reverseAlignmentVector                  html  
    seqLogo                                 html  
    shannonDivergence                       html  
    sumOfAbsICDifferences                   html  
    sumOfAbsProbabilityDifferences          html  
    sumProbabilities                        html  
    switchDirection                         html  
    twoSetsAveragePwmDivergenceFromAlignmentVector
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DiffLogo' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DiffLogo' as DiffLogo_2.18.0.zip
* DONE (DiffLogo)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DiffLogo' successfully unpacked and MD5 sums checked