| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:28 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the DirichletMultinomial package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DirichletMultinomial.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 516/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DirichletMultinomial 1.36.0 (landing page) Martin Morgan
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DirichletMultinomial |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DirichletMultinomial_1.36.0.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.36.0.zip && rm DirichletMultinomial_1.36.0.tar.gz DirichletMultinomial_1.36.0.zip |
| StartedAt: 2022-04-12 04:37:48 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:39:32 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 103.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DirichletMultinomial_1.36.0.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.36.0.zip && rm DirichletMultinomial_1.36.0.tar.gz DirichletMultinomial_1.36.0.zip
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install for i386
* installing *source* package 'DirichletMultinomial' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit.c -o dirichlet_fit.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
int signum, status;
^~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DirichletMultinomial'
finding HTML links ... done
DMN-class html
DMNGroup-class html
finding level-2 HTML links ... done
DirichletMultinomial-package html
cvdmngroup html
dataobjects html
dmn html
dmngroup html
fitted html
heatmapdmn html
roc html
util html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DirichletMultinomial' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit.c -o dirichlet_fit.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
int signum, status;
^~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DirichletMultinomial' as DirichletMultinomial_1.36.0.zip
* DONE (DirichletMultinomial)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DirichletMultinomial' successfully unpacked and MD5 sums checked