Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:05:19 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ENVISIONQuery on nebbiolo2


To the developers/maintainers of the ENVISIONQuery package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ENVISIONQuery.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 586/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ENVISIONQuery 1.42.0  (landing page)
Alex Lisovich , Roger Day
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ENVISIONQuery
git_branch: RELEASE_3_14
git_last_commit: 5d48286
git_last_commit_date: 2021-10-26 11:58:32 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ENVISIONQuery
Version: 1.42.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ENVISIONQuery
StartedAt: 2022-04-12 04:27:59 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:28:03 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 4.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ENVISIONQuery
###
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* checking for file ‘ENVISIONQuery/DESCRIPTION’ ... OK
* preparing ‘ENVISIONQuery’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ENVISIONQuery.Rnw’ using Sweave
Loading required package: rJava
Loading required package: XML
Warning: Package 'ENVISIONQuery' is deprecated and will be removed from
  Bioconductor version 3.15
Warning in getService("ID Conversion") :
  ENVISIONQuery: Invalid service name
Warning in getService("Reactome") : ENVISIONQuery: Invalid service name

Error: processing vignette 'ENVISIONQuery.Rnw' failed with diagnostics:
 chunk 1 (label = chunk1) 
Error in if (!(toolName %in% toolNames)) { : argument is of length zero

--- failed re-building ‘ENVISIONQuery.Rnw’

SUMMARY: processing the following file failed:
  ‘ENVISIONQuery.Rnw’

Error: Vignette re-building failed.
Execution halted