Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:37 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GENIE3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 741/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GENIE3 1.16.0 (landing page) Van Anh Huynh-Thu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: GENIE3 |
Version: 1.16.0 |
Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.16.0.tar.gz |
StartedAt: 2022-04-13 06:18:05 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 06:18:31 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 26.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GENIE3_1.16.0.zip |
PackageFileSize: 287.4 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.16.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GENIE3' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment" in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet" ** help *** installing help indices converting help for package 'GENIE3' finding HTML links ... done GENIE3 html getLinkList html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GENIE3' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GENIE3' as GENIE3_1.16.0.zip * DONE (GENIE3)