Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:41 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GUIDEseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GUIDEseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 842/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GUIDEseq 1.24.0 (landing page) Lihua Julie Zhu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GUIDEseq |
Version: 1.24.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GUIDEseq.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GUIDEseq_1.24.0.tar.gz |
StartedAt: 2022-04-12 20:55:27 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 21:03:38 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 490.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GUIDEseq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GUIDEseq.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GUIDEseq_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/GUIDEseq.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'GUIDEseq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GUIDEseq' version '1.24.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GUIDEseq' can be installed ... OK * checking installed package size ... NOTE installed size is 11.0Mb sub-directories of 1Mb or more: extdata 10.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE annotateOffTargets: no visible binding for global variable 'offTarget_Start' annotateOffTargets: no visible global function definition for 'exons' annotateOffTargets: no visible global function definition for 'seqlevelsStyle<-' annotateOffTargets: no visible global function definition for 'genes' getPeaks: no visible binding for global variable 'adjusted.p.value' getPeaks: no visible binding for global variable 'SNratio' getPeaks.old: no visible global function definition for 'clusterExport' getPeaks.old: no visible global function definition for 'parLapply' getUniqueCleavageEvents: no visible binding for global variable 'qwidth.first' getUniqueCleavageEvents: no visible binding for global variable 'qwidth.last' getUniqueCleavageEvents: no visible binding for global variable 'strand.last' getUniqueCleavageEvents: no visible binding for global variable 'strand.first' getUniqueCleavageEvents: no visible binding for global variable 'readName' getUniqueCleavageEvents: no visible binding for global variable 'UMI' importBEDAlignments: no visible global function definition for 'parLapply' offTargetAnalysisOfPeakRegions: no visible binding for global variable 'thePeak' offTargetAnalysisOfPeakRegions: no visible global function definition for 'parLapply' offTargetAnalysisOfPeakRegions: no visible binding for global variable 'gRNAPlusPAM' offTargetAnalysisOfPeakRegions: no visible binding for global variable 'offTarget' Undefined global functions or variables: SNratio UMI adjusted.p.value clusterExport exons gRNAPlusPAM genes offTarget offTarget_Start parLapply qwidth.first qwidth.last readName seqlevelsStyle<- strand.first strand.last thePeak * checking Rd files ... NOTE prepare_Rd: annotateOffTargets.Rd:33-35: Dropping empty section \details prepare_Rd: annotateOffTargets.Rd:43-45: Dropping empty section \references prepare_Rd: createBarcodeFasta.Rd:42-43: Dropping empty section \value prepare_Rd: createBarcodeFasta.Rd:44-46: Dropping empty section \references prepare_Rd: getUsedBarcodes.Rd:39-41: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed GUIDEseqAnalysis 11.59 0.95 12.80 annotateOffTargets 7.53 0.84 8.37 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed GUIDEseqAnalysis 9.16 0.41 9.56 annotateOffTargets 7.84 0.34 8.19 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/GUIDEseq.Rcheck/00check.log' for details.
GUIDEseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GUIDEseq_1.24.0.tar.gz && rm -rf GUIDEseq.buildbin-libdir && mkdir GUIDEseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GUIDEseq.buildbin-libdir GUIDEseq_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GUIDEseq_1.24.0.zip && rm GUIDEseq_1.24.0.tar.gz GUIDEseq_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 23 4528k 23 1058k 0 0 1089k 0 0:00:04 --:--:-- 0:00:04 1090k 69 4528k 69 3146k 0 0 1596k 0 0:00:02 0:00:01 0:00:01 1596k 100 4528k 100 4528k 0 0 1842k 0 0:00:02 0:00:02 --:--:-- 1843k install for i386 * installing *source* package 'GUIDEseq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GUIDEseq' finding HTML links ... done GUIDEseq-package html GUIDEseqAnalysis html annotateOffTargets html combineOfftargets html createBarcodeFasta html getPeaks html getUniqueCleavageEvents html getUsedBarcodes html mergePlusMinusPeaks html offTargetAnalysisOfPeakRegions html peaks.gr html uniqueCleavageEvents html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GUIDEseq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GUIDEseq' as GUIDEseq_1.24.0.zip * DONE (GUIDEseq) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GUIDEseq' successfully unpacked and MD5 sums checked
GUIDEseq.Rcheck/examples_i386/GUIDEseq-Ex.timings
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GUIDEseq.Rcheck/examples_x64/GUIDEseq-Ex.timings
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