HyungJun Cho
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/HEM |
| git_branch: RELEASE_3_14 |
| git_last_commit: c131900 |
| git_last_commit_date: 2021-10-26 11:47:04 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HEM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 861/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HEM 1.66.0 (landing page) HyungJun Cho
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HEM |
| Version: 1.66.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HEM_1.66.0.tar.gz && rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HEM_1.66.0.zip && rm HEM_1.66.0.tar.gz HEM_1.66.0.zip |
| StartedAt: 2022-04-12 04:28:38 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:29:49 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 71.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HEM_1.66.0.tar.gz && rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HEM_1.66.0.zip && rm HEM_1.66.0.tar.gz HEM_1.66.0.zip
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install for i386
* installing *source* package 'HEM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i, j, k, m, n;
^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int i, j, k, l;
^
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HEM.buildbin-libdir/00LOCK-HEM/00new/HEM/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HEM'
finding HTML links ... done
am.tran html
am.tran.half html
base.ASE.Olig html
base.PSE.Olig html
base.error.Olig html
base.error.Olig.quanOnly html
boot.base.ASE.Olig html
boot.base.PSE.Olig html
boot.base.error.Olig html
fixbound.predict.smooth.spline html
hem html
hem.eb.prior html
hem.fdr html
hem.null.no html
hem.null.one html
hem.null.two html
hem.preproc html
mubcp html
nonpar.error.Olig html
nonpar.no.error.Olig html
nonpar.rep.error.Olig html
par.error.Olig html
par.no.error.Olig html
par.rep.error.Olig html
pbrain html
permut html
quant.norm html
quant.normal html
quant.normal2 html
quant.normalize html
remove.sig.genes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HEM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i, j, k, m, n;
^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int i, j, k, l;
^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HEM.buildbin-libdir/HEM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HEM' as HEM_1.66.0.zip
* DONE (HEM)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HEM' successfully unpacked and MD5 sums checked