Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:11 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the INSPEcT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/INSPEcT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 936/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
INSPEcT 1.24.0 (landing page) Stefano de Pretis
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: INSPEcT |
Version: 1.24.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.24.0.tar.gz |
StartedAt: 2022-04-12 14:29:39 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 14:52:13 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 1354.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: INSPEcT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/INSPEcT.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘INSPEcT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘INSPEcT’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘INSPEcT’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: R 2.0Mb data 2.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE output_pars: no visible global function definition for ‘plot.new’ plotSingleRNADynamic: no visible global function definition for ‘lines’ Undefined global functions or variables: lines plot.new Consider adding importFrom("graphics", "lines", "plot.new") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeSimDataset 167.976 0.437 168.531 quantifyExpressionsFromBAMs 63.656 13.218 77.449 INSPEcT_diffsteady-class 67.364 0.566 68.015 compareSteady 65.207 0.271 65.555 plotMA 62.031 0.237 62.326 rocThresholds 60.267 0.163 60.510 rocCurve 60.011 0.167 60.240 makeSimModel 56.875 0.145 57.078 quantifyExpressionsFromTrCounts 39.614 0.075 39.736 newINSPEcT 36.979 0.198 37.210 processingDelay 36.742 0.121 37.325 modelRates 33.266 0.134 33.428 compareSteadyNoNascent 16.032 0.043 16.090 makeOscillatorySimModel 14.067 0.057 14.138 inspectFromPCR 6.874 0.039 6.919 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.14-bioc/meat/INSPEcT.Rcheck/00check.log’ for details.
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
name | user | system | elapsed | |
AIC-INSPEcT-method | 0.297 | 0.013 | 0.312 | |
Extract | 0.785 | 0.009 | 0.794 | |
INSPEcT_diffsteady-class | 67.364 | 0.566 | 68.015 | |
calculateRatePvals | 0.451 | 0.014 | 0.466 | |
chisqmodel | 0.269 | 0.005 | 0.274 | |
chisqtest | 0.312 | 0.013 | 0.325 | |
combine | 0.646 | 0.010 | 0.656 | |
compareSteady | 65.207 | 0.271 | 65.555 | |
compareSteadyNoNascent | 16.032 | 0.043 | 16.090 | |
convergence | 0.307 | 0.011 | 0.320 | |
geneClass | 0.436 | 0.011 | 0.449 | |
inHeatmap | 0.371 | 0.015 | 0.389 | |
inspectFromPCR | 6.874 | 0.039 | 6.919 | |
labeledSF | 0.337 | 0.006 | 0.344 | |
logLik | 0.324 | 0.013 | 0.336 | |
makeModelRates | 0.427 | 0.013 | 0.442 | |
makeOscillatorySimModel | 14.067 | 0.057 | 14.138 | |
makeSimDataset | 167.976 | 0.437 | 168.531 | |
makeSimModel | 56.875 | 0.145 | 57.078 | |
modelRates | 33.266 | 0.134 | 33.428 | |
modelRatesNF | 2.536 | 0.050 | 2.588 | |
modelSelection | 0.314 | 0.009 | 0.324 | |
modelingParams | 0.331 | 0.003 | 0.334 | |
nGenes | 0.297 | 0.003 | 0.299 | |
nTpts | 0.309 | 0.006 | 0.316 | |
newINSPEcT | 36.979 | 0.198 | 37.210 | |
plotGene | 0.307 | 0.008 | 0.316 | |
plotMA | 62.031 | 0.237 | 62.326 | |
processingDelay | 36.742 | 0.121 | 37.325 | |
quantifyExpressionsFromBAMs | 63.656 | 13.218 | 77.449 | |
quantifyExpressionsFromTrCounts | 39.614 | 0.075 | 39.736 | |
ratePvals | 0.286 | 0.003 | 0.289 | |
ratesFirstGuess | 0.298 | 0.007 | 0.306 | |
ratesFirstGuessVar | 0.216 | 0.004 | 0.220 | |
removeModel | 0.509 | 0.004 | 0.512 | |
rocCurve | 60.011 | 0.167 | 60.240 | |
rocThresholds | 60.267 | 0.163 | 60.510 | |
split | 0.503 | 0.003 | 0.508 | |
tpts | 0.336 | 0.003 | 0.339 | |
viewConfidenceIntervals | 0.311 | 0.010 | 0.321 | |
viewModelRates | 0.334 | 0.006 | 0.341 | |