Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:12 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the IRISFGM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IRISFGM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 955/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IRISFGM 1.2.0 (landing page) Yuzhou Chang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: IRISFGM |
Version: 1.2.0 |
Command: rm -rf IRISFGM.buildbin-libdir && mkdir IRISFGM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh IRISFGM_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R IRISFGM.buildbin-libdir |
StartedAt: 2022-04-12 20:54:53 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 20:57:03 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 130.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: IRISFGM_1.2.0.tgz |
PackageFileSize: 2.46 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf IRISFGM.buildbin-libdir && mkdir IRISFGM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh IRISFGM_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R IRISFGM.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=IRISFGM.buildbin-libdir IRISFGM_1.2.0.tar.gz' >>>>>>> * installing *source* package ‘IRISFGM’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c cluster.cpp -o cluster.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c expand.cpp -o expand.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c get_options.cpp -o get_options.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c getline.c -o getline.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c main.cpp -o main.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c make_graph.cpp -o make_graph.o make_graph.cpp:51:5: warning: variable 'i' is incremented both in the loop header and in the loop body [-Wfor-loop-analysis] i++; ^ make_graph.cpp:45:29: note: incremented here for (int i = 0; i < cols; i++) { ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c rcpp_irisfgm.cpp -o rcpp_irisfgm.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c read_array.cpp -o read_array.o read_array.cpp:882:43: warning: format specifies type 'int' but the argument has type 'std::__1::__vector_base<unsigned long, std::__1::allocator<unsigned long> >::value_type' (aka 'unsigned long') [-Wformat] fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]); ~~ ^~~~~~~~~~~~~ %lu read_array.cpp:1376:43: warning: format specifies type 'int' but the argument has type 'std::__1::__vector_base<unsigned long, std::__1::allocator<unsigned long> >::value_type' (aka 'unsigned long') [-Wformat] fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]); ~~ ^~~~~~~~~~~~~ %lu 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c struct.cpp -o struct.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -DVER=2.08 -fPIC -Wall -g -O2 -c write_block.cpp -o write_block.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o IRISFGM.so RcppExports.o cluster.o expand.o get_options.o getline.o main.o make_graph.o rcpp_irisfgm.o read_array.o struct.o write_block.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.14-bioc/meat/IRISFGM.buildbin-libdir/00LOCK-IRISFGM/00new/IRISFGM/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘ReadFrom10X_h5’ in package ‘IRISFGM’ Creating a generic function from function ‘ReadFrom10X_folder’ in package ‘IRISFGM’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRISFGM) >>>>>>> >>>>>>> FIXING LINKS FOR IRISFGM.buildbin-libdir/IRISFGM/libs/IRISFGM.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "IRISFGM.buildbin-libdir/IRISFGM/libs/IRISFGM.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "IRISFGM.buildbin-libdir/IRISFGM/libs/IRISFGM.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "IRISFGM.buildbin-libdir/IRISFGM/libs/IRISFGM.so"