Christelle Reynès
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ISoLDE |
| git_branch: RELEASE_3_14 |
| git_last_commit: fcaeb58 |
| git_last_commit_date: 2021-10-26 12:26:25 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:46 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ISoLDE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ISoLDE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 965/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ISoLDE 1.22.0 (landing page) Christelle Reynès
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: ISoLDE |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISoLDE_1.22.0.tar.gz && rm -rf ISoLDE.buildbin-libdir && mkdir ISoLDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISoLDE.buildbin-libdir ISoLDE_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISoLDE_1.22.0.zip && rm ISoLDE_1.22.0.tar.gz ISoLDE_1.22.0.zip |
| StartedAt: 2022-04-12 04:00:11 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:01:04 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 53.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISoLDE_1.22.0.tar.gz && rm -rf ISoLDE.buildbin-libdir && mkdir ISoLDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISoLDE.buildbin-libdir ISoLDE_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISoLDE_1.22.0.zip && rm ISoLDE_1.22.0.tar.gz ISoLDE_1.22.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
81 1256k 81 1024k 0 0 1151k 0 0:00:01 --:--:-- 0:00:01 1150k
100 1256k 100 1256k 0 0 1253k 0 0:00:01 0:00:01 --:--:-- 1253k
install for i386
* installing *source* package 'ISoLDE' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Isolde.c -o Isolde.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ISoLDE.buildbin-libdir/00LOCK-ISoLDE/00new/ISoLDE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ISoLDE'
finding HTML links ... done
ISoLDE-package html
filterT html
filteredASRcounts html
isolde_test html
normASRcounts html
rawASRcounts html
readNormInput html
readRawInput html
readTarget html
target html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ISoLDE' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Isolde.c -o Isolde.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ISoLDE.buildbin-libdir/ISoLDE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ISoLDE' as ISoLDE_1.22.0.zip
* DONE (ISoLDE)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ISoLDE' successfully unpacked and MD5 sums checked