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This page was generated on 2022-04-13 12:06:45 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for InterMineR on tokay2


To the developers/maintainers of the InterMineR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 946/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InterMineR 1.16.0  (landing page)
InterMine Team
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/InterMineR
git_branch: RELEASE_3_14
git_last_commit: 275a095
git_last_commit_date: 2021-10-26 12:37:51 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: InterMineR
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/InterMineR_1.16.0.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.16.0.zip && rm InterMineR_1.16.0.tar.gz InterMineR_1.16.0.zip
StartedAt: 2022-04-12 05:41:05 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:42:18 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 73.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/InterMineR_1.16.0.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.16.0.zip && rm InterMineR_1.16.0.tar.gz InterMineR_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 4506k    2 97081    0     0   399k      0  0:00:11 --:--:--  0:00:11  400k
 39 4506k   39 1783k    0     0  1445k      0  0:00:03  0:00:01  0:00:02 1446k
 71 4506k   71 3233k    0     0  1457k      0  0:00:03  0:00:02  0:00:01 1457k
100 4506k  100 4506k    0     0  1601k      0  0:00:02  0:00:02 --:--:-- 1601k

install for i386

* installing *source* package 'InterMineR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'intersect' in package 'InterMineR'
Creating a new generic function for 'union' in package 'InterMineR'
** help
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpCupX1U/R.INSTALL1db85ac34efa/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item'
*** installing help indices
  converting help for package 'InterMineR'
    finding HTML links ... done
    InterMineR-class                        html  
    InterMineR-methods                      html  
    InterMineR-package                      html  
    ListManager-class                       html  
    ListManager-methods                     html  
    PL_DiabetesGenes                        html  
    PL_FlyTF_site_specific_TFs              html  
    convertToGRanges                        html  
    convertToGeneAnswers                    html  
    convertToRangedSummarizedExperiment     html  
    doEnrichment                            html  
    getDatasets                             html  
    getGeneIds                              html  
    getModel                                html  
    getRelease                              html  
    getTemplateQuery                        html  
    getTemplates                            html  
    getVersion                              html  
    getWidgets                              html  
    initInterMine                           html  
    listDatasets                            html  
    listMines                               html  
    list_manager                            html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/InterMineR.buildbin-libdir/00LOCK-InterMineR/00new/InterMineR/help/webservice-methods.html
    newQuery                                html  
    runQuery                                html  
    setConstraints                          html  
    setQuery                                html  
    simplifyResult                          html  
    summary                                 html  
    webservice-class                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'InterMineR' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
* MD5 sums
packaged installation of 'InterMineR' as InterMineR_1.16.0.zip
* DONE (InterMineR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'InterMineR' successfully unpacked and MD5 sums checked