Ting Huang
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/MSstatsTMT |
| git_branch: RELEASE_3_14 |
| git_last_commit: 11f937a |
| git_last_commit_date: 2022-02-18 13:37:51 -0400 (Fri, 18 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MSstatsTMT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1235/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSstatsTMT 2.2.7 (landing page) Ting Huang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MSstatsTMT |
| Version: 2.2.7 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMT_2.2.7.tar.gz && rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.2.7.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMT_2.2.7.zip && rm MSstatsTMT_2.2.7.tar.gz MSstatsTMT_2.2.7.zip |
| StartedAt: 2022-04-12 05:23:21 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:25:32 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 131.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMT_2.2.7.tar.gz && rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.2.7.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMT_2.2.7.zip && rm MSstatsTMT_2.2.7.tar.gz MSstatsTMT_2.2.7.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
95 1532k 95 1460k 0 0 1511k 0 0:00:01 --:--:-- 0:00:01 1510k
100 1532k 100 1532k 0 0 1526k 0 0:00:01 0:00:01 --:--:-- 1529k
install for i386
* installing *source* package 'MSstatsTMT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSstatsTMT'
finding HTML links ... done
MSstatsComparisonModelSingleTMT html
MSstatsFitComparisonModelsTMT html
MSstatsGroupComparisonOutputTMT html
MSstatsGroupComparisonTMT html
MSstatsModerateTTest html
MSstatsNormalizeTMT html
MSstatsPrepareForGroupComparisonTMT html
MSstatsPrepareForSummarizationTMT html
MSstatsSummarizationOutputTMT html
MSstatsSummarizeTMT html
MSstatsTMT html
MSstatsTestSingleProteinTMT html
MaxQtoMSstatsTMTFormat html
OpenMStoMSstatsTMTFormat html
PDtoMSstatsTMTFormat html
PhilosophertoMSstatsTMTFormat html
SpectroMinetoMSstatsTMTFormat html
annotation.mine html
annotation.mq html
annotation.pd html
dataProcessPlotsTMT html
dot-checkContrastMatrix html
dot-checkSummarizationParams html
dot-countRunsWithNorm html
dot-documentFunction html
dot-getNormalizationAbundance html
dot-getRunsMedian html
dot-handleSingleContrastTMT html
dot-logSum html
dot-logSummarizationParams html
dot-makeContrastSingleTMT html
dot-makeFactorColumnsTMT html
dot-medianPolish html
dot-normalizePeptides html
dot-normalizeProteins html
dot-prepareForSummarization html
dot-removeRedundantChannels html
dot-summarizeMSstats html
dot-summarizeSimpleStat html
dot-summarizeTMP html
dot-summarizeTMT html
evidence html
getProcessedTMT html
getSummarizedTMT html
groupComparisonTMT html
input.pd html
proteinGroups html
proteinSummarization html
quant.pd.msstats html
raw.mine html
raw.om html
raw.pd html
test.pairwise html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSstatsTMT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsTMT' as MSstatsTMT_2.2.7.zip
* DONE (MSstatsTMT)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MSstatsTMT' successfully unpacked and MD5 sums checked