| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MSstatsTMTPTM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMTPTM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1236/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Devon Kohler
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: MSstatsTMTPTM |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMTPTM_1.4.0.tar.gz && rm -rf MSstatsTMTPTM.buildbin-libdir && mkdir MSstatsTMTPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMTPTM.buildbin-libdir MSstatsTMTPTM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMTPTM_1.4.0.zip && rm MSstatsTMTPTM_1.4.0.tar.gz MSstatsTMTPTM_1.4.0.zip |
| StartedAt: 2022-04-12 05:25:34 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:26:39 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 64.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMTPTM_1.4.0.tar.gz && rm -rf MSstatsTMTPTM.buildbin-libdir && mkdir MSstatsTMTPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMTPTM.buildbin-libdir MSstatsTMTPTM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMTPTM_1.4.0.zip && rm MSstatsTMTPTM_1.4.0.tar.gz MSstatsTMTPTM_1.4.0.zip
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install for i386
* installing *source* package 'MSstatsTMTPTM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_adjust.cpp -o model_adjust.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsTMTPTM.dll tmp.def RcppExports.o model_adjust.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsTMTPTM.buildbin-libdir/00LOCK-MSstatsTMTPTM/00new/MSstatsTMTPTM/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSstatsTMTPTM'
finding HTML links ... done
MSstatsTMTPTM html
dataProcessPlotsTMTPTM html
example.contrast.matrix html
groupComparisonTMTPTM html
model.results.contrast html
model.results.pairwise html
quant.msstats.protein html
quant.msstats.ptm html
raw.protein html
raw.ptm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
Bioconductor version 3.15
** testing if installed package can be loaded from final location
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
Bioconductor version 3.15
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSstatsTMTPTM' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_adjust.cpp -o model_adjust.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsTMTPTM.dll tmp.def RcppExports.o model_adjust.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsTMTPTM.buildbin-libdir/MSstatsTMTPTM/libs/x64
** testing if installed package can be loaded
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
Bioconductor version 3.15
* MD5 sums
packaged installation of 'MSstatsTMTPTM' as MSstatsTMTPTM_1.4.0.zip
* DONE (MSstatsTMTPTM)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MSstatsTMTPTM' successfully unpacked and MD5 sums checked