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### Running command:
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### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MineICA
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* checking for file ‘MineICA/DESCRIPTION’ ... OK
* preparing ‘MineICA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MineICA.Rnw’ using Sweave
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: Category
Loading required package: stats4
Loading required package: AnnotationDbi
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:plyr’:
rename
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I, expand.grid, unname
Attaching package: ‘IRanges’
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desc
Loading required package: Matrix
Attaching package: ‘Matrix’
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expand
Loading required package: graph
Attaching package: ‘graph’
The following object is masked from ‘package:plyr’:
join
Attaching package: ‘GOstats’
The following object is masked from ‘package:AnnotationDbi’:
makeGOGraph
Loading required package: limma
Attaching package: ‘limma’
The following object is masked from ‘package:BiocGenerics’:
plotMA
Package 'mclust' version 5.4.9
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: ‘igraph’
The following objects are masked from ‘package:graph’:
degree, edges, intersection, union
The following object is masked from ‘package:IRanges’:
union
The following object is masked from ‘package:S4Vectors’:
union
The following objects are masked from ‘package:BiocGenerics’:
normalize, path, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
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union
Loading required package: grid
Attaching package: ‘Rgraphviz’
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from, to
The following objects are masked from ‘package:S4Vectors’:
from, to
Loading required package: XML
Attaching package: ‘XML’
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addNode
Attaching package: ‘annotate’
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toFile
Attaching package: ‘gtools’
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permute
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Attaching package: ‘Hmisc’
The following object is masked from ‘package:AnnotationDbi’:
contents
The following objects are masked from ‘package:xtable’:
label, label<-
The following objects are masked from ‘package:plyr’:
is.discrete, summarize
The following object is masked from ‘package:Biobase’:
contents
The following objects are masked from ‘package:base’:
format.pval, units
Loading required package: fastICA
Loading required package: JADE
Number of selected genes is 10000
Max IQR is 0.89
Loading required package: org.Hs.eg.db
Ensembl site unresponsive, trying uswest mirror
Error: processing vignette 'MineICA.Rnw' failed with diagnostics:
chunk 10 (label = mart)
Error in curl::curl_fetch_memory(url, handle = handle) :
SSL certificate problem: unable to get local issuer certificate
--- failed re-building ‘MineICA.Rnw’
SUMMARY: processing the following file failed:
‘MineICA.Rnw’
Error: Vignette re-building failed.
Execution halted
