Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MultiBaC package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiBaC.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1239/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MultiBaC 1.4.0 (landing page) Manuel Ugidos
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: MultiBaC |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MultiBaC.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MultiBaC_1.4.0.tar.gz |
StartedAt: 2022-04-12 23:24:27 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 23:28:17 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 229.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MultiBaC.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MultiBaC.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MultiBaC_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MultiBaC.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MultiBaC/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MultiBaC' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MultiBaC' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Q2_plot: no visible global function definition for 'rgb' explained_varPlot: no visible global function definition for 'rgb' Undefined global functions or variables: rgb Consider adding importFrom("grDevices", "rgb") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'ARSyNbac': ARSyNbac Code: function(mbac, batchEstimation = TRUE, filterNoise = TRUE, Interaction = FALSE, Variability = 0.9, beta = 2, modelName = "Model 1", showplot = TRUE) Docs: function(mbac, batchEstimation = TRUE, Interaction = FALSE, Variability = 0.9, beta = 2, modelName = "Model 1", showplot = TRUE) Argument names in code not in docs: filterNoise Mismatches in argument names (first 3): Position: 3 Code: filterNoise Docs: Interaction Position: 4 Code: Interaction Docs: Variability Position: 5 Code: Variability Docs: beta * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_pca 9.03 0.00 9.08 inner_relPlot 8.93 0.06 8.98 plot 8.91 0.00 8.92 MultiBaC 8.73 0.06 8.81 Q2_plot 8.39 0.24 8.62 explained_varPlot 8.61 0.00 8.61 ARSyNbac 7.92 0.47 8.41 batchCorrection 7.95 0.01 7.97 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot 12.31 0.00 12.33 explained_varPlot 12.19 0.00 12.19 inner_relPlot 11.90 0.01 11.92 plot_pca 11.21 0.00 11.21 batchCorrection 11.05 0.00 11.05 MultiBaC 10.53 0.02 10.55 Q2_plot 10.40 0.03 10.43 ARSyNbac 8.81 0.22 9.03 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MultiBaC.Rcheck/00check.log' for details.
MultiBaC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MultiBaC_1.4.0.tar.gz && rm -rf MultiBaC.buildbin-libdir && mkdir MultiBaC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MultiBaC.buildbin-libdir MultiBaC_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MultiBaC_1.4.0.zip && rm MultiBaC_1.4.0.tar.gz MultiBaC_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 102k 100 102k 0 0 452k 0 --:--:-- --:--:-- --:--:-- 453k install for i386 * installing *source* package 'MultiBaC' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MultiBaC' finding HTML links ... done A.gro html A.rna html ARSyNbac html B.ribo html B.rna html C.par html C.rna html MultiBaC html Q2_plot html batchCorrection html batchEstPlot html createMbac html explained_varPlot html genMissingOmics html genModelList html inner_relPlot html multiyeast html plot html plot_pca html summary html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MultiBaC' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MultiBaC' as MultiBaC_1.4.0.zip * DONE (MultiBaC) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MultiBaC' successfully unpacked and MD5 sums checked
MultiBaC.Rcheck/examples_i386/MultiBaC-Ex.timings
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MultiBaC.Rcheck/examples_x64/MultiBaC-Ex.timings
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