Klara Kaleb
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/OmaDB |
| git_branch: RELEASE_3_14 |
| git_last_commit: 753099f |
| git_last_commit_date: 2021-10-26 12:40:14 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:01 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmaDB package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmaDB.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1321/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmaDB 2.10.0 (landing page) Klara Kaleb
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: OmaDB |
| Version: 2.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmaDB_2.10.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.10.0.zip && rm OmaDB_2.10.0.tar.gz OmaDB_2.10.0.zip |
| StartedAt: 2022-04-12 05:13:17 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:14:50 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 93.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmaDB_2.10.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.10.0.zip && rm OmaDB_2.10.0.tar.gz OmaDB_2.10.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 211k 100 211k 0 0 618k 0 --:--:-- --:--:-- --:--:-- 620k
install for i386
* installing *source* package 'OmaDB' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmaDB'
finding HTML links ... done
OmaDB-deprecated html
OmaDB-package html
annotateSequence html
cash-.omadb_obj html
formatTopGO html
getAnnotation-deprecated html
getAttribute html
getData-deprecated html
getGenome html
getGenomeAlignment-deprecated html
getGenomePairs html
getHOG html
getLocus html
getOMAGroup html
getObjectAttributes html
getProtein html
getTaxonomy html
getTopGO html
getTree html
getVersion html
getXref-deprecated html
group html
hog html
mapSequence html
orthologs html
pairs html
protein html
resolveURL html
searchProtein html
sequence_annotation html
sequence_map html
setAPI html
taxonomy html
xref html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmaDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmaDB' as OmaDB_2.10.0.zip
* DONE (OmaDB)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'OmaDB' successfully unpacked and MD5 sums checked