Multiple platform build/check report for BioC 3.14 - CHECK results for RandomWalkRestartMH on tokay2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: RandomWalkRestartMH

Version: 1.14.0

Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RandomWalkRestartMH.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RandomWalkRestartMH_1.14.0.tar.gz

StartedAt: 2022-04-13 01:14:00 -0400 (Wed, 13 Apr 2022)

EndedAt: 2022-04-13 01:15:58 -0400 (Wed, 13 Apr 2022)

EllapsedTime: 117.6 seconds

RetCode: 0

Status: WARNINGS

CheckDir: RandomWalkRestartMH.Rcheck

Warnings: 1

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RandomWalkRestartMH.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RandomWalkRestartMH_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RandomWalkRestartMH.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RandomWalkRestartMH/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RandomWalkRestartMH' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 3-1.png
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 4-1.png
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
Found the following non-portable file path:
  RandomWalkRestartMH/docs/articles/RandomWalkRestartMH_files/accessible-code-block-0.0.1/empty-anchor.js

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'RandomWalkRestartMH' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/RandomWalkRestartMH.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RandomWalkRestartMH_1.14.0.tar.gz && rm -rf RandomWalkRestartMH.buildbin-libdir && mkdir RandomWalkRestartMH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RandomWalkRestartMH.buildbin-libdir RandomWalkRestartMH_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RandomWalkRestartMH_1.14.0.zip && rm RandomWalkRestartMH_1.14.0.tar.gz RandomWalkRestartMH_1.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 23 4528k   23 1072k    0     0  1177k      0  0:00:03 --:--:--  0:00:03 1177k
 72 4528k   72 3264k    0     0  1703k      0  0:00:02  0:00:01  0:00:01 1703k
100 4528k  100 4528k    0     0  1918k      0  0:00:02  0:00:02 --:--:-- 1918k

install for i386

* installing *source* package 'RandomWalkRestartMH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RandomWalkRestartMH'
    finding HTML links ... done
    Disease_Network                         html  
    GeneDiseaseRelations                    html  
    PPI_Network                             html  
    Pathway_Network                         html  
    Random.Walk.Restart.Multiplex           html  
    Random.Walk.Restart.MultiplexHet        html  
    compute.adjacency.matrix                html  
    compute.transition.matrix               html  
    create.multiplex                        html  
    create.multiplexHet                     html  
    create.multiplexHetNetwork.topResults   html  
    create.multiplexNetwork.topResults      html  
    isMultiplex                             html  
    isMultiplexHet                          html  
    isRWRMH_Results                         html  
    isRWRM_Results                          html  
    normalize.multiplex.adjacency           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RandomWalkRestartMH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RandomWalkRestartMH' as RandomWalkRestartMH_1.14.0.zip
* DONE (RandomWalkRestartMH)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RandomWalkRestartMH' successfully unpacked and MD5 sums checked


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RandomWalkRestartMH)
> 
> test_check("RandomWalkRestartMH")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
> 
> proc.time()
   user  system elapsed 
   4.40    0.32    4.71


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RandomWalkRestartMH)
> 
> test_check("RandomWalkRestartMH")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
> 
> proc.time()
   user  system elapsed 
   4.62    0.34    4.96

name	user	system	elapsed
Random.Walk.Restart.Multiplex	0.35	0.00	0.34
Random.Walk.Restart.MultiplexHet	0.17	0.03	0.20
compute.adjacency.matrix	0.00	0.02	0.01
compute.transition.matrix	0.04	0.03	0.08
create.multiplex	0.00	0.02	0.02
create.multiplexHet	0.02	0.01	0.03
create.multiplexHetNetwork.topResults	0.12	0.02	0.14
create.multiplexNetwork.topResults	0.07	0.03	0.09
isMultiplex	0.01	0.00	0.02
isMultiplexHet	0.02	0.00	0.01
isRWRMH_Results	0.11	0.00	0.11
isRWRM_Results	0.05	0.00	0.05
normalize.multiplex.adjacency	0.01	0.00	0.01

name	user	system	elapsed
Random.Walk.Restart.Multiplex	0.39	0.00	0.39
Random.Walk.Restart.MultiplexHet	0.22	0.00	0.21
compute.adjacency.matrix	0.03	0.00	0.04
compute.transition.matrix	0.08	0.00	0.07
create.multiplex	0	0	0
create.multiplexHet	0.03	0.00	0.04
create.multiplexHetNetwork.topResults	0.14	0.00	0.14
create.multiplexNetwork.topResults	0.08	0.00	0.07
isMultiplex	0.02	0.00	0.02
isMultiplexHet	0.01	0.00	0.02
isRWRMH_Results	0.11	0.00	0.10
isRWRM_Results	0.05	0.00	0.05
normalize.multiplex.adjacency	0.03	0.00	0.03

CHECK results for RandomWalkRestartMH on tokay2

Summary

Command output

Installation output

Tests output

Example timings